miRNA display CGI


Results 21 - 40 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 3' -60.4 NC_004812.1 + 89268 0.66 0.751055
Target:  5'- uGGG-ACGCGcaggccGCGGCgCgGCGCGGa- -3'
miRNA:   3'- -CCCaUGCGCu-----CGUCGaGgCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 40083 0.66 0.751055
Target:  5'- cGGGcg-GCGGGCGGCgggcggCCggGCGCGcGUCc -3'
miRNA:   3'- -CCCaugCGCUCGUCGa-----GG--CGCGC-CAG- -5'
21567 3' -60.4 NC_004812.1 + 52321 0.66 0.751055
Target:  5'- gGGGUGgGCGGcacuuaaauacGCGGC-CCGCcccgGCgGGUCg -3'
miRNA:   3'- -CCCAUgCGCU-----------CGUCGaGGCG----CG-CCAG- -5'
21567 3' -60.4 NC_004812.1 + 140626 0.66 0.750124
Target:  5'- cGGGgcCGCGGGguCGGCgccgccggCCGCGgggcgucCGGUCg -3'
miRNA:   3'- -CCCauGCGCUC--GUCGa-------GGCGC-------GCCAG- -5'
21567 3' -60.4 NC_004812.1 + 126807 0.66 0.744519
Target:  5'- -cGUACGCGAGCcgucuguuugccaccAGCUgcccgaccaucgcCCGUGUGGUg -3'
miRNA:   3'- ccCAUGCGCUCG---------------UCGA-------------GGCGCGCCAg -5'
21567 3' -60.4 NC_004812.1 + 154965 0.66 0.741704
Target:  5'- aGGGgggaCGGGCGGg-CCGCGCGGg- -3'
miRNA:   3'- -CCCaugcGCUCGUCgaGGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 142418 0.66 0.741704
Target:  5'- uGGcGCgGCGAcGCAGUugUCCGCGCG-UCg -3'
miRNA:   3'- cCCaUG-CGCU-CGUCG--AGGCGCGCcAG- -5'
21567 3' -60.4 NC_004812.1 + 100141 0.66 0.741704
Target:  5'- uGGcgGCGCGGGCGGCgggGCGgGGcUCa -3'
miRNA:   3'- cCCa-UGCGCUCGUCGaggCGCgCC-AG- -5'
21567 3' -60.4 NC_004812.1 + 18867 0.66 0.741704
Target:  5'- cGGGUccCGgGGGuCGGCggcCCGCG-GGUCg -3'
miRNA:   3'- -CCCAu-GCgCUC-GUCGa--GGCGCgCCAG- -5'
21567 3' -60.4 NC_004812.1 + 29457 0.66 0.741704
Target:  5'- aGGGgggaCGGGCGGg-CCGCGCGGg- -3'
miRNA:   3'- -CCCaugcGCUCGUCgaGGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 42941 0.66 0.741704
Target:  5'- ---aGCGCGAGCAcg-CCGCG-GGUCu -3'
miRNA:   3'- cccaUGCGCUCGUcgaGGCGCgCCAG- -5'
21567 3' -60.4 NC_004812.1 + 8302 0.66 0.741704
Target:  5'- --cUGCGCcGGgAGCUCCGCGCGu-- -3'
miRNA:   3'- cccAUGCGcUCgUCGAGGCGCGCcag -5'
21567 3' -60.4 NC_004812.1 + 20294 0.66 0.740764
Target:  5'- -aGUGCGCGAGCgguccugacguccAGCgcccggggCCGCGaCGcGUCg -3'
miRNA:   3'- ccCAUGCGCUCG-------------UCGa-------GGCGC-GC-CAG- -5'
21567 3' -60.4 NC_004812.1 + 152736 0.66 0.732264
Target:  5'- uGGcUGCGCGAGCuGCgccgCaCGCGCGa-- -3'
miRNA:   3'- cCC-AUGCGCUCGuCGa---G-GCGCGCcag -5'
21567 3' -60.4 NC_004812.1 + 148305 0.66 0.732264
Target:  5'- cGGcGUACGCGcGgAGCUCCcgGCGCaGaUCg -3'
miRNA:   3'- -CC-CAUGCGCuCgUCGAGG--CGCGcC-AG- -5'
21567 3' -60.4 NC_004812.1 + 123819 0.66 0.732264
Target:  5'- gGGGUGcCGCGGGCggGGC-CCGgGCGc-- -3'
miRNA:   3'- -CCCAU-GCGCUCG--UCGaGGCgCGCcag -5'
21567 3' -60.4 NC_004812.1 + 145959 0.66 0.732264
Target:  5'- uGGGUGCGgggcacccuCGGGCugggggccguGCUgUGCGgGGUCg -3'
miRNA:   3'- -CCCAUGC---------GCUCGu---------CGAgGCGCgCCAG- -5'
21567 3' -60.4 NC_004812.1 + 79439 0.66 0.732264
Target:  5'- gGGGUuuG-GGGUGGCgccuUCCGCGCGG-Cg -3'
miRNA:   3'- -CCCAugCgCUCGUCG----AGGCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 90937 0.66 0.732264
Target:  5'- cGGGccUugGCGGGC-GCUcucCCGCGgGGcUCc -3'
miRNA:   3'- -CCC--AugCGCUCGuCGA---GGCGCgCC-AG- -5'
21567 3' -60.4 NC_004812.1 + 156018 0.66 0.732264
Target:  5'- cGGGUccGCGCuaccgGAGCcgcgcccgcGGCUCCaCGCGGcCg -3'
miRNA:   3'- -CCCA--UGCG-----CUCG---------UCGAGGcGCGCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.