Results 61 - 80 of 297 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21567 | 5' | -54.1 | NC_004812.1 | + | 136928 | 0.67 | 0.930731 |
Target: 5'- --cGCCGCGCuGG-ACgugaACGCGCa -3' miRNA: 3'- guuCGGCGCGuUCaUGaug-UGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 112311 | 0.67 | 0.917994 |
Target: 5'- uCGAGUCGCGCcucGGgcgGCUGgccgcggaggcgguCGCGCGCg -3' miRNA: 3'- -GUUCGGCGCGu--UCa--UGAU--------------GUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 30392 | 0.67 | 0.91973 |
Target: 5'- gGGGCCgGCGCccggGCUGC-CGCGCc -3' miRNA: 3'- gUUCGG-CGCGuucaUGAUGuGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 141404 | 0.67 | 0.927536 |
Target: 5'- cCAGGCCGCGCGcaaAGUccaGCaGCgaggcccggagggcgGCGCGCc -3' miRNA: 3'- -GUUCGGCGCGU---UCA---UGaUG---------------UGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 137193 | 0.67 | 0.91973 |
Target: 5'- -cGGCCGCGCG---GC--CACGCGCa -3' miRNA: 3'- guUCGGCGCGUucaUGauGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 1017 | 0.67 | 0.925355 |
Target: 5'- gGGGCCGCGCccccgcGAGggcccgGCcgcccGCGCGCGCc -3' miRNA: 3'- gUUCGGCGCG------UUCa-----UGa----UGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 117784 | 0.67 | 0.930731 |
Target: 5'- -cGGCCGCGCcg-----GCGCGCGCc -3' miRNA: 3'- guUCGGCGCGuucaugaUGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 155900 | 0.67 | 0.91973 |
Target: 5'- gGGGCCgGCGCccggGCUGC-CGCGCc -3' miRNA: 3'- gUUCGG-CGCGuucaUGAUGuGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 94337 | 0.67 | 0.907736 |
Target: 5'- ---aCCGCGUggGU-CUcCGCGCGCg -3' miRNA: 3'- guucGGCGCGuuCAuGAuGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 128243 | 0.67 | 0.913857 |
Target: 5'- --cGCgGCGCAGGU----CGCGCGCg -3' miRNA: 3'- guuCGgCGCGUUCAugauGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 153469 | 0.67 | 0.907736 |
Target: 5'- --uGCgCGUGCuGGUGCUcUACGCGCc -3' miRNA: 3'- guuCG-GCGCGuUCAUGAuGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 108640 | 0.67 | 0.907736 |
Target: 5'- -uGGCCGCcuaccgGCGGgcGUACUACggcaGCGCGCa -3' miRNA: 3'- guUCGGCG------CGUU--CAUGAUG----UGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 144723 | 0.67 | 0.913857 |
Target: 5'- gAGGUCGCGCAcGUGCgcgGCGucacgguuucccUGCGCa -3' miRNA: 3'- gUUCGGCGCGUuCAUGa--UGU------------GCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 91505 | 0.67 | 0.91973 |
Target: 5'- gGGGCCGCGCcAGccACUccuccgcgGgGCGCGCg -3' miRNA: 3'- gUUCGGCGCGuUCa-UGA--------UgUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 152016 | 0.67 | 0.913857 |
Target: 5'- --cGCgGCGCGgcAGUACgcccucauCACGCGCc -3' miRNA: 3'- guuCGgCGCGU--UCAUGau------GUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 74690 | 0.67 | 0.91973 |
Target: 5'- gGAGCCGCG--GGUAgUGCGCGUccGCc -3' miRNA: 3'- gUUCGGCGCguUCAUgAUGUGCG--CGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 126526 | 0.67 | 0.925355 |
Target: 5'- gGGGCCGCGCccccgcGAGggcccgGCcgcccGCGCGCGCc -3' miRNA: 3'- gUUCGGCGCG------UUCa-----UGa----UGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 51280 | 0.67 | 0.925355 |
Target: 5'- gGAGCUgGCGCAca---UGCGCGCGCg -3' miRNA: 3'- gUUCGG-CGCGUucaugAUGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 65538 | 0.67 | 0.907736 |
Target: 5'- cCAAGCgGCGCAA--GCUGCugGUcucggaGCUg -3' miRNA: 3'- -GUUCGgCGCGUUcaUGAUGugCG------CGA- -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 109741 | 0.67 | 0.925355 |
Target: 5'- gGGGCUGCgacugacgugGCGcGUGC-ACGCGCGCa -3' miRNA: 3'- gUUCGGCG----------CGUuCAUGaUGUGCGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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