miRNA display CGI


Results 81 - 100 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 37935 0.67 0.913857
Target:  5'- aCGAGgCGCGCcAGgGCgcagaACACGUGCUc -3'
miRNA:   3'- -GUUCgGCGCGuUCaUGa----UGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 152016 0.67 0.913857
Target:  5'- --cGCgGCGCGgcAGUACgcccucauCACGCGCc -3'
miRNA:   3'- guuCGgCGCGU--UCAUGau------GUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 128243 0.67 0.913857
Target:  5'- --cGCgGCGCAGGU----CGCGCGCg -3'
miRNA:   3'- guuCGgCGCGUUCAugauGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 144723 0.67 0.913857
Target:  5'- gAGGUCGCGCAcGUGCgcgGCGucacgguuucccUGCGCa -3'
miRNA:   3'- gUUCGGCGCGUuCAUGa--UGU------------GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 88750 0.67 0.930731
Target:  5'- aCGGGCUGCGCAAcaGCcaguuCAuCGCGCUg -3'
miRNA:   3'- -GUUCGGCGCGUUcaUGau---GU-GCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 74945 0.67 0.932812
Target:  5'- gGAGCCGUcgcgcgccgcggucaGCGGGUGCgccucgaagACGCGcCGCg -3'
miRNA:   3'- gUUCGGCG---------------CGUUCAUGa--------UGUGC-GCGa -5'
21567 5' -54.1 NC_004812.1 + 94337 0.67 0.907736
Target:  5'- ---aCCGCGUggGU-CUcCGCGCGCg -3'
miRNA:   3'- guucGGCGCGuuCAuGAuGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 26508 0.67 0.913857
Target:  5'- --cGCgGCGCGgcAGUACgcccucauCACGCGCc -3'
miRNA:   3'- guuCGgCGCGU--UCAUGau------GUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 2735 0.67 0.913857
Target:  5'- --cGCgGCGCAGGU----CGCGCGCg -3'
miRNA:   3'- guuCGgCGCGUUCAugauGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 151691 0.67 0.907736
Target:  5'- aAAGacCCGCGCGGGUuuAUUcGCugGCGCa -3'
miRNA:   3'- gUUC--GGCGCGUUCA--UGA-UGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 27960 0.67 0.907736
Target:  5'- --uGCgCGUGCuGGUGCUcUACGCGCc -3'
miRNA:   3'- guuCG-GCGCGuUCAUGAuGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 20325 0.67 0.907736
Target:  5'- gGGGCCGCGacgcguCGAGUGCagggcggGCACGgGCc -3'
miRNA:   3'- gUUCGGCGC------GUUCAUGa------UGUGCgCGa -5'
21567 5' -54.1 NC_004812.1 + 62281 0.67 0.913857
Target:  5'- gCAGGCCGCGCcgcacaccUACUGCAgcgaGUGCg -3'
miRNA:   3'- -GUUCGGCGCGuuc-----AUGAUGUg---CGCGa -5'
21567 5' -54.1 NC_004812.1 + 125060 0.67 0.913857
Target:  5'- gAGGUCGCGUucGUcGCU-CGCGUGCa -3'
miRNA:   3'- gUUCGGCGCGuuCA-UGAuGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 19503 0.67 0.930731
Target:  5'- aAGGUCaGCGUcguGUACU-CGCGCGCg -3'
miRNA:   3'- gUUCGG-CGCGuu-CAUGAuGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 30173 0.68 0.87352
Target:  5'- gGAGCgCGCgGCGGGcucgGCGCGCGCg -3'
miRNA:   3'- gUUCG-GCG-CGUUCaugaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 28432 0.68 0.880833
Target:  5'- --cGCgCGCGuCGAGgccgcCUGCGCGCGCc -3'
miRNA:   3'- guuCG-GCGC-GUUCau---GAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 1520 0.68 0.87352
Target:  5'- --cGCCGCGCGAGg---GCAUGcCGCc -3'
miRNA:   3'- guuCGGCGCGUUCaugaUGUGC-GCGa -5'
21567 5' -54.1 NC_004812.1 + 120778 0.68 0.87352
Target:  5'- --uGCUGCGCAAGUACcGCgacgGCGaCGCc -3'
miRNA:   3'- guuCGGCGCGUUCAUGaUG----UGC-GCGa -5'
21567 5' -54.1 NC_004812.1 + 100340 0.68 0.87352
Target:  5'- gCGGGCCGcCGCGGGcgagGCgcagGgGCGCGCc -3'
miRNA:   3'- -GUUCGGC-GCGUUCa---UGa---UgUGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.