miRNA display CGI


Results 41 - 60 of 297 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 100300 0.73 0.638199
Target:  5'- --cGCgCGCGCGcGcGCUGCGCGUGCUg -3'
miRNA:   3'- guuCG-GCGCGUuCaUGAUGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 28779 0.73 0.638199
Target:  5'- --cGCUGCGCGccuuCUGCGCGCGCg -3'
miRNA:   3'- guuCGGCGCGUucauGAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 156585 0.73 0.64864
Target:  5'- --cGCCGCGCGuuUAUUuucGCGCGCGCg -3'
miRNA:   3'- guuCGGCGCGUucAUGA---UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 175 0.73 0.64864
Target:  5'- --cGCCGCGCGuuUAUUuucGCGCGCGCg -3'
miRNA:   3'- guuCGGCGCGUucAUGA---UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 125684 0.73 0.64864
Target:  5'- --cGCCGCGCGuuUAUUuucGCGCGCGCg -3'
miRNA:   3'- guuCGGCGCGUucAUGA---UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 65060 0.73 0.64864
Target:  5'- --cGCCGcCGCGGGUACUcggcggACGCGgGCUc -3'
miRNA:   3'- guuCGGC-GCGUUCAUGA------UGUGCgCGA- -5'
21567 5' -54.1 NC_004812.1 + 47105 0.73 0.659068
Target:  5'- --cGCCaCGCGGGUgugcgggacGCUGCugGCGCUg -3'
miRNA:   3'- guuCGGcGCGUUCA---------UGAUGugCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 152675 0.73 0.659068
Target:  5'- -cGGCCGCGCGcgccGUGCcGCGcCGCGCg -3'
miRNA:   3'- guUCGGCGCGUu---CAUGaUGU-GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 27099 0.73 0.659068
Target:  5'- --uGCCGCGCc-GUGCUGgAgGCGCUg -3'
miRNA:   3'- guuCGGCGCGuuCAUGAUgUgCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 152608 0.73 0.659068
Target:  5'- --uGCCGCGCc-GUGCUGgAgGCGCUg -3'
miRNA:   3'- guuCGGCGCGuuCAUGAUgUgCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 64661 0.73 0.659068
Target:  5'- --cGCaaCGCGCGAGUACgUGCACgaGCGCUg -3'
miRNA:   3'- guuCG--GCGCGUUCAUG-AUGUG--CGCGA- -5'
21567 5' -54.1 NC_004812.1 + 93716 0.73 0.659068
Target:  5'- --uGCaCGCGguAGUAggGCACGCGCg -3'
miRNA:   3'- guuCG-GCGCguUCAUgaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 48028 0.72 0.669472
Target:  5'- uUAGGCCGCGCugcccgaGCgggGCGCGCGCc -3'
miRNA:   3'- -GUUCGGCGCGuuca---UGa--UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 30230 0.72 0.67881
Target:  5'- gGGGCgCGCGCGGGcgggGCUcgcggccgcggggACACGCGCg -3'
miRNA:   3'- gUUCG-GCGCGUUCa---UGA-------------UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 155738 0.72 0.67881
Target:  5'- gGGGCgCGCGCGGGcgggGCUcgcggccgcggggACACGCGCg -3'
miRNA:   3'- gUUCG-GCGCGUUCa---UGA-------------UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 115475 0.72 0.679846
Target:  5'- --cGCCGCGCGcGUGCgGC-CGCGCc -3'
miRNA:   3'- guuCGGCGCGUuCAUGaUGuGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 128773 0.72 0.690178
Target:  5'- gCGGGCCGCagcgcgcggcgaGCGAGgcCaGCGCGCGCg -3'
miRNA:   3'- -GUUCGGCG------------CGUUCauGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 125132 0.72 0.690178
Target:  5'- gGAGCCGCGCccgcgGCUccacgcggccGCGCGCGCc -3'
miRNA:   3'- gUUCGGCGCGuuca-UGA----------UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 13157 0.72 0.690178
Target:  5'- -cAGCgaCGCGCGAG-ACaACACGCGCa -3'
miRNA:   3'- guUCG--GCGCGUUCaUGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 3265 0.72 0.690178
Target:  5'- gCGGGCCGCagcgcgcggcgaGCGAGgcCaGCGCGCGCg -3'
miRNA:   3'- -GUUCGGCG------------CGUUCauGaUGUGCGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.