miRNA display CGI


Results 61 - 80 of 297 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 156033 0.72 0.690178
Target:  5'- gGAGCCGCGCccgcgGCUccacgcggccGCGCGCGCc -3'
miRNA:   3'- gUUCGGCGCGuuca-UGA----------UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 13157 0.72 0.690178
Target:  5'- -cAGCgaCGCGCGAG-ACaACACGCGCa -3'
miRNA:   3'- guUCG--GCGCGUUCaUGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 35075 0.72 0.70046
Target:  5'- -cAGCCGCGCGAcgauCU-CGCGCGCg -3'
miRNA:   3'- guUCGGCGCGUUcau-GAuGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 136279 0.72 0.704557
Target:  5'- --cGCCuGCGCGcgcccgcgugggggcGGUGcCUGCGCGCGCg -3'
miRNA:   3'- guuCGG-CGCGU---------------UCAU-GAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 39552 0.72 0.707623
Target:  5'- gCGGGCCGuCGCGggcgaugagcggcuGGUgcaccucgaACUGCACGCGCc -3'
miRNA:   3'- -GUUCGGC-GCGU--------------UCA---------UGAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 156138 0.72 0.710682
Target:  5'- aCGGGCCGCGCGgacgcGGgGCgcgGgACGCGCg -3'
miRNA:   3'- -GUUCGGCGCGU-----UCaUGa--UgUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 30630 0.72 0.710682
Target:  5'- aCGGGCCGCGCGgacgcGGgGCgcgGgACGCGCg -3'
miRNA:   3'- -GUUCGGCGCGU-----UCaUGa--UgUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 98637 0.71 0.71881
Target:  5'- -cGGCCGCGCugcgcccggGCgcgACGCGCGCa -3'
miRNA:   3'- guUCGGCGCGuuca-----UGa--UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 79554 0.71 0.720835
Target:  5'- cCGAGgCGCGCGAGcGCcucgcCGCGCGCg -3'
miRNA:   3'- -GUUCgGCGCGUUCaUGau---GUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 62891 0.71 0.720835
Target:  5'- --cGCCGCGC--GUGCccuacuaccgcgUGCACGCGCg -3'
miRNA:   3'- guuCGGCGCGuuCAUG------------AUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 96872 0.71 0.720835
Target:  5'- -cGGCCGC-CAGGaGCUGgACGUGCUg -3'
miRNA:   3'- guUCGGCGcGUUCaUGAUgUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 79783 0.71 0.720835
Target:  5'- gCAGGCCGCGCccccggAGGUGCgcgccGCccuGCGCGCc -3'
miRNA:   3'- -GUUCGGCGCG------UUCAUGa----UG---UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 82809 0.71 0.720835
Target:  5'- -cGGCgGCGUccGUGC-GCACGCGCg -3'
miRNA:   3'- guUCGgCGCGuuCAUGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 9234 0.71 0.730908
Target:  5'- gAGGCCcCGCGuuccaucgACUACGCGCGCa -3'
miRNA:   3'- gUUCGGcGCGUuca-----UGAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 105116 0.71 0.730908
Target:  5'- -cGGCCGgGUAcgGGUAUUcgACGCGCGCg -3'
miRNA:   3'- guUCGGCgCGU--UCAUGA--UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 80319 0.71 0.730908
Target:  5'- --cGCCGCGCugcugGAGgcgGCcGCGCGCGCc -3'
miRNA:   3'- guuCGGCGCG-----UUCa--UGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 80633 0.71 0.730908
Target:  5'- uCGAGCUGCGCcgc--CUGCAgGCGCUg -3'
miRNA:   3'- -GUUCGGCGCGuucauGAUGUgCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 72835 0.71 0.730908
Target:  5'- aCGGGCCGCuGCAGucGCUguGgGCGCGCUg -3'
miRNA:   3'- -GUUCGGCG-CGUUcaUGA--UgUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 20295 0.71 0.740893
Target:  5'- uGGGCgGCGCGccGGcGCaGCGCGCGCg -3'
miRNA:   3'- gUUCGgCGCGU--UCaUGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 154805 0.71 0.740893
Target:  5'- gCGAGgCGCGCAgccGGggcccgaUGCACGCGCUc -3'
miRNA:   3'- -GUUCgGCGCGU---UCaug----AUGUGCGCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.