miRNA display CGI


Results 81 - 100 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 20295 0.71 0.740893
Target:  5'- uGGGCgGCGCGccGGcGCaGCGCGCGCg -3'
miRNA:   3'- gUUCGgCGCGU--UCaUGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 154805 0.71 0.740893
Target:  5'- gCGAGgCGCGCAgccGGggcccgaUGCACGCGCUc -3'
miRNA:   3'- -GUUCgGCGCGU---UCaug----AUGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 65457 0.71 0.749794
Target:  5'- --uGCUGCGCGAGUGCggcuggACccccccgggccgaGCGCGCg -3'
miRNA:   3'- guuCGGCGCGUUCAUGa-----UG-------------UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 71973 0.71 0.750778
Target:  5'- --cGCCGCGgGAG-GCU-CACGCGCc -3'
miRNA:   3'- guuCGGCGCgUUCaUGAuGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 154163 0.71 0.760555
Target:  5'- --cGCCGCgGCGAGgcgcACUcgcaccgcgccuGCGCGCGCUg -3'
miRNA:   3'- guuCGGCG-CGUUCa---UGA------------UGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 53119 0.71 0.760555
Target:  5'- -cGGCCGuCGCGgagcGGUACUACcgcgagacgGCGCGCc -3'
miRNA:   3'- guUCGGC-GCGU----UCAUGAUG---------UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 28655 0.71 0.760555
Target:  5'- --cGCCGCgGCGAGgcgcACUcgcaccgcgccuGCGCGCGCUg -3'
miRNA:   3'- guuCGGCG-CGUUCa---UGA------------UGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 23497 0.7 0.769253
Target:  5'- gGGGCUGCugucgcacuacguGCGGGUGCUGCugGgGCc -3'
miRNA:   3'- gUUCGGCG-------------CGUUCAUGAUGugCgCGa -5'
21567 5' -54.1 NC_004812.1 + 14367 0.7 0.770213
Target:  5'- -cGGCCGCGCGGGcGCgGCG-GCGCa -3'
miRNA:   3'- guUCGGCGCGUUCaUGaUGUgCGCGa -5'
21567 5' -54.1 NC_004812.1 + 28488 0.7 0.770213
Target:  5'- uGGGCCGCGgcgcCAAcGUGCgcuaccGCGCGCGCa -3'
miRNA:   3'- gUUCGGCGC----GUU-CAUGa-----UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 153996 0.7 0.770213
Target:  5'- uGGGCCGCGgcgcCAAcGUGCgcuaccGCGCGCGCa -3'
miRNA:   3'- gUUCGGCGC----GUU-CAUGa-----UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 114423 0.7 0.779743
Target:  5'- ---aCCGCGCGGGUggACgGCGCGUGCg -3'
miRNA:   3'- guucGGCGCGUUCA--UGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 100019 0.7 0.788203
Target:  5'- --cGCCGCGCGAucGUcGCUGCAuggcggcCGCGCg -3'
miRNA:   3'- guuCGGCGCGUU--CA-UGAUGU-------GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 98538 0.7 0.789135
Target:  5'- aCGAGCCGuCGCAGGgcgccgagggAgUcCACGCGCUc -3'
miRNA:   3'- -GUUCGGC-GCGUUCa---------UgAuGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 47171 0.7 0.789135
Target:  5'- cCAGGCCGCGCGGGUcacCUuaAUAUGCGa- -3'
miRNA:   3'- -GUUCGGCGCGUUCAu--GA--UGUGCGCga -5'
21567 5' -54.1 NC_004812.1 + 153400 0.7 0.789135
Target:  5'- --cGCCGCGCGccucGGgcccGCUGCGcCGCGCc -3'
miRNA:   3'- guuCGGCGCGU----UCa---UGAUGU-GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 27892 0.7 0.789135
Target:  5'- --cGCCGCGCGccucGGgcccGCUGCGcCGCGCc -3'
miRNA:   3'- guuCGGCGCGU----UCa---UGAUGU-GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 51552 0.7 0.789135
Target:  5'- cCAGGCCGUcccgGCGAGc---GCACGCGCa -3'
miRNA:   3'- -GUUCGGCG----CGUUCaugaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 7902 0.7 0.797463
Target:  5'- aGGGUCGCccGCAGGUgucggggGCUGCGgCGCGCg -3'
miRNA:   3'- gUUCGGCG--CGUUCA-------UGAUGU-GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 38803 0.7 0.797463
Target:  5'- aGGGUCGCccGCAGGUgucggggGCUGCGgCGCGCg -3'
miRNA:   3'- gUUCGGCG--CGUUCA-------UGAUGU-GCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.