miRNA display CGI


Results 101 - 120 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 65912 0.7 0.79838
Target:  5'- gGGGCC-CGUggGUGCUGCucaaGCGCc -3'
miRNA:   3'- gUUCGGcGCGuuCAUGAUGug--CGCGa -5'
21567 5' -54.1 NC_004812.1 + 141460 0.7 0.802035
Target:  5'- cCAGGUCGUGCGGGgagcccccgaggcgACgcggccggACGCGCGCUa -3'
miRNA:   3'- -GUUCGGCGCGUUCa-------------UGa-------UGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 58753 0.7 0.807469
Target:  5'- gCGGGcCCGCGCAGG-AUgucCACGUGCUu -3'
miRNA:   3'- -GUUC-GGCGCGUUCaUGau-GUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 141987 0.7 0.811058
Target:  5'- gAGGCCGCGCGGGUGCcccggcugcagugguUccgggacgugGC-CGCGCUg -3'
miRNA:   3'- gUUCGGCGCGUUCAUG---------------A----------UGuGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 121343 0.7 0.816391
Target:  5'- cCAGGgCGCGCGccaUGUUGCACGCGCg -3'
miRNA:   3'- -GUUCgGCGCGUuc-AUGAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 94037 0.7 0.816391
Target:  5'- -cGGCgUGUGCcccGUGCUGCGCGUGCUc -3'
miRNA:   3'- guUCG-GCGCGuu-CAUGAUGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 140007 0.7 0.816391
Target:  5'- cCAGGuCUGUcagGUAGGU-CUGCACGCGCg -3'
miRNA:   3'- -GUUC-GGCG---CGUUCAuGAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 152244 0.7 0.816391
Target:  5'- cCAGGgCGCGCGccaUGUUGCACGCGCg -3'
miRNA:   3'- -GUUCgGCGCGUuc-AUGAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 140600 0.7 0.816391
Target:  5'- aAGGCCugGCGgAGcUGCUGCugGCGCg -3'
miRNA:   3'- gUUCGG--CGCgUUcAUGAUGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 19827 0.69 0.82514
Target:  5'- aGGGCCaccagcGCGCAcgcGUACaGCGCGCGCc -3'
miRNA:   3'- gUUCGG------CGCGUu--CAUGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 106713 0.69 0.82514
Target:  5'- --cGCUGCGC--GUGCUGCugGCGg- -3'
miRNA:   3'- guuCGGCGCGuuCAUGAUGugCGCga -5'
21567 5' -54.1 NC_004812.1 + 155848 0.69 0.82514
Target:  5'- gGGGCCcgcgGCGCcGGgagGCgagGCGCGCGCg -3'
miRNA:   3'- gUUCGG----CGCGuUCa--UGa--UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 30340 0.69 0.82514
Target:  5'- gGGGCCcgcgGCGCcGGgagGCgagGCGCGCGCg -3'
miRNA:   3'- gUUCGG----CGCGuUCa--UGa--UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 73773 0.69 0.833705
Target:  5'- -cGGCgCGCGCAcccccgGGUACgcugaugACGCGCGUg -3'
miRNA:   3'- guUCG-GCGCGU------UCAUGa------UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 83741 0.69 0.833705
Target:  5'- -uGGCgGCGCA---GCUGCcCGCGCUg -3'
miRNA:   3'- guUCGgCGCGUucaUGAUGuGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 63013 0.69 0.833705
Target:  5'- gCGGGCCGcCGCGuccGCgaGCGCGCGCUu -3'
miRNA:   3'- -GUUCGGC-GCGUucaUGa-UGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 43701 0.69 0.833705
Target:  5'- uCGGGCCgGCGCAGGU-CUGgGCG-GCUu -3'
miRNA:   3'- -GUUCGG-CGCGUUCAuGAUgUGCgCGA- -5'
21567 5' -54.1 NC_004812.1 + 58127 0.69 0.833705
Target:  5'- --cGCCGCcccacccaCGAcccuGUACUACACGCGCa -3'
miRNA:   3'- guuCGGCGc-------GUU----CAUGAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 110016 0.69 0.833705
Target:  5'- --cGUCGCGCcgcuccuGUGCUACccggccGCGCGCUa -3'
miRNA:   3'- guuCGGCGCGuu-----CAUGAUG------UGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 153850 0.69 0.837079
Target:  5'- --cGCCGCGC-AGUGCgACguccgcuggcccgccGCGCGCg -3'
miRNA:   3'- guuCGGCGCGuUCAUGaUG---------------UGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.