miRNA display CGI


Results 121 - 140 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 153850 0.69 0.837079
Target:  5'- --cGCCGCGC-AGUGCgACguccgcuggcccgccGCGCGCg -3'
miRNA:   3'- guuCGGCGCGuUCAUGaUG---------------UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 117293 0.69 0.84208
Target:  5'- -cGGCCGaC-CAGaUGCUGCACGUGCUa -3'
miRNA:   3'- guUCGGC-GcGUUcAUGAUGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 65091 0.69 0.84208
Target:  5'- -uGGCCGCGCGccccgcggaggAGUG--GCugGCGCg -3'
miRNA:   3'- guUCGGCGCGU-----------UCAUgaUGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 98317 0.69 0.84208
Target:  5'- --cGgCGCGCGGGUGCUgGCuCGCGUa -3'
miRNA:   3'- guuCgGCGCGUUCAUGA-UGuGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 108532 0.69 0.847824
Target:  5'- -cGGCCGCcgaguacgcgcccgGCGAGUcGCUGCGCuCGCUg -3'
miRNA:   3'- guUCGGCG--------------CGUUCA-UGAUGUGcGCGA- -5'
21567 5' -54.1 NC_004812.1 + 4725 0.69 0.850256
Target:  5'- cCAGGCCGCc---GUAgaGCACGCGCc -3'
miRNA:   3'- -GUUCGGCGcguuCAUgaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 130233 0.69 0.850256
Target:  5'- cCAGGCCGCc---GUAgaGCACGCGCc -3'
miRNA:   3'- -GUUCGGCGcguuCAUgaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 21536 0.69 0.850256
Target:  5'- -uGGCCGCaCGGGUACggACACGUGgUg -3'
miRNA:   3'- guUCGGCGcGUUCAUGa-UGUGCGCgA- -5'
21567 5' -54.1 NC_004812.1 + 53284 0.69 0.855857
Target:  5'- -cAGCCGCGCGAacucgaccgaggacGUGguCUugAUGCGCUc -3'
miRNA:   3'- guUCGGCGCGUU--------------CAU--GAugUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 81697 0.69 0.858226
Target:  5'- --cGCuCGCGCGc---CUGCACGCGCg -3'
miRNA:   3'- guuCG-GCGCGUucauGAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 91947 0.69 0.858226
Target:  5'- --cGCuCGUGCAcGUACU-CGCGCGUUg -3'
miRNA:   3'- guuCG-GCGCGUuCAUGAuGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 28958 0.69 0.858226
Target:  5'- --uGCCccaGCGCAAcgcGUACUACAgCGUGCUc -3'
miRNA:   3'- guuCGG---CGCGUU---CAUGAUGU-GCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 2287 0.68 0.865217
Target:  5'- aCGAGCgGCGCGgcgucggGGUccgGCUcgagcaggGCGCGCGCg -3'
miRNA:   3'- -GUUCGgCGCGU-------UCA---UGA--------UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 127795 0.68 0.865217
Target:  5'- aCGAGCgGCGCGgcgucggGGUccgGCUcgagcaggGCGCGCGCg -3'
miRNA:   3'- -GUUCGgCGCGU-------UCA---UGA--------UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 41123 0.68 0.865983
Target:  5'- cCGGGCCGcCGCccGGcGCggccGCACGCGCg -3'
miRNA:   3'- -GUUCGGC-GCGu-UCaUGa---UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 4712 0.68 0.865983
Target:  5'- --cGCCGCGCGAGgACgGgGCGUGUg -3'
miRNA:   3'- guuCGGCGCGUUCaUGaUgUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 99002 0.68 0.865983
Target:  5'- aGGGUCGCguucaGCAGGUACUGgGCGUGgUg -3'
miRNA:   3'- gUUCGGCG-----CGUUCAUGAUgUGCGCgA- -5'
21567 5' -54.1 NC_004812.1 + 44393 0.68 0.865983
Target:  5'- --cGCCGCGCAGGgccagguucGCgauaACGCGCa -3'
miRNA:   3'- guuCGGCGCGUUCa--------UGaug-UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 87160 0.68 0.865983
Target:  5'- -cGGCCGCGCGacagaGGaUGCgcCGCGUGCg -3'
miRNA:   3'- guUCGGCGCGU-----UC-AUGauGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 45963 0.68 0.865983
Target:  5'- cCAGGCUGUGCA------GCACGCGCa -3'
miRNA:   3'- -GUUCGGCGCGUucaugaUGUGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.