miRNA display CGI


Results 61 - 80 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 88750 0.67 0.930731
Target:  5'- aCGGGCUGCGCAAcaGCcaguuCAuCGCGCUg -3'
miRNA:   3'- -GUUCGGCGCGUUcaUGau---GU-GCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 120789 0.67 0.930731
Target:  5'- aAAGaccCCGCGCGGGUuuAUUcGCugGCGCa -3'
miRNA:   3'- gUUC---GGCGCGUUCA--UGA-UGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 136928 0.67 0.930731
Target:  5'- --cGCCGCGCuGG-ACgugaACGCGCa -3'
miRNA:   3'- guuCGGCGCGuUCaUGaug-UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 19503 0.67 0.930731
Target:  5'- aAGGUCaGCGUcguGUACU-CGCGCGCg -3'
miRNA:   3'- gUUCGG-CGCGuu-CAUGAuGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 141404 0.67 0.927536
Target:  5'- cCAGGCCGCGCGcaaAGUccaGCaGCgaggcccggagggcgGCGCGCc -3'
miRNA:   3'- -GUUCGGCGCGU---UCA---UGaUG---------------UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 126526 0.67 0.925355
Target:  5'- gGGGCCGCGCccccgcGAGggcccgGCcgcccGCGCGCGCc -3'
miRNA:   3'- gUUCGGCGCG------UUCa-----UGa----UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 1017 0.67 0.925355
Target:  5'- gGGGCCGCGCccccgcGAGggcccgGCcgcccGCGCGCGCc -3'
miRNA:   3'- gUUCGGCGCG------UUCa-----UGa----UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 48104 0.67 0.925355
Target:  5'- --cGCCGUGCGccccGUGCgggcGCugGCGCc -3'
miRNA:   3'- guuCGGCGCGUu---CAUGa---UGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 137573 0.67 0.925355
Target:  5'- --cGCCGCGgcCGAGagGCUGCcgccCGCGCUg -3'
miRNA:   3'- guuCGGCGC--GUUCa-UGAUGu---GCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 51280 0.67 0.925355
Target:  5'- gGAGCUgGCGCAca---UGCGCGCGCg -3'
miRNA:   3'- gUUCGG-CGCGUucaugAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 124138 0.67 0.925355
Target:  5'- aCGGGCCGCGC-----CU-CACGCGCc -3'
miRNA:   3'- -GUUCGGCGCGuucauGAuGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 109741 0.67 0.925355
Target:  5'- gGGGCUGCgacugacgugGCGcGUGC-ACGCGCGCa -3'
miRNA:   3'- gUUCGGCG----------CGUuCAUGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 30392 0.67 0.91973
Target:  5'- gGGGCCgGCGCccggGCUGC-CGCGCc -3'
miRNA:   3'- gUUCGG-CGCGuucaUGAUGuGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 91505 0.67 0.91973
Target:  5'- gGGGCCGCGCcAGccACUccuccgcgGgGCGCGCg -3'
miRNA:   3'- gUUCGGCGCGuUCa-UGA--------UgUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 74690 0.67 0.91973
Target:  5'- gGAGCCGCG--GGUAgUGCGCGUccGCc -3'
miRNA:   3'- gUUCGGCGCguUCAUgAUGUGCG--CGa -5'
21567 5' -54.1 NC_004812.1 + 155900 0.67 0.91973
Target:  5'- gGGGCCgGCGCccggGCUGC-CGCGCc -3'
miRNA:   3'- gUUCGG-CGCGuucaUGAUGuGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 137193 0.67 0.91973
Target:  5'- -cGGCCGCGCG---GC--CACGCGCa -3'
miRNA:   3'- guUCGGCGCGUucaUGauGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 35919 0.67 0.918576
Target:  5'- aCGAGCuCGCGCucccGGgcggccgcuugaACUGCACGuCGCUg -3'
miRNA:   3'- -GUUCG-GCGCGu---UCa-----------UGAUGUGC-GCGA- -5'
21567 5' -54.1 NC_004812.1 + 112311 0.67 0.917994
Target:  5'- uCGAGUCGCGCcucGGgcgGCUGgccgcggaggcgguCGCGCGCg -3'
miRNA:   3'- -GUUCGGCGCGu--UCa--UGAU--------------GUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 37935 0.67 0.913857
Target:  5'- aCGAGgCGCGCcAGgGCgcagaACACGUGCUc -3'
miRNA:   3'- -GUUCgGCGCGuUCaUGa----UGUGCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.