Results 81 - 100 of 297 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21567 | 5' | -54.1 | NC_004812.1 | + | 62281 | 0.67 | 0.913857 |
Target: 5'- gCAGGCCGCGCcgcacaccUACUGCAgcgaGUGCg -3' miRNA: 3'- -GUUCGGCGCGuuc-----AUGAUGUg---CGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 128243 | 0.67 | 0.913857 |
Target: 5'- --cGCgGCGCAGGU----CGCGCGCg -3' miRNA: 3'- guuCGgCGCGUUCAugauGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 144723 | 0.67 | 0.913857 |
Target: 5'- gAGGUCGCGCAcGUGCgcgGCGucacgguuucccUGCGCa -3' miRNA: 3'- gUUCGGCGCGUuCAUGa--UGU------------GCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 152016 | 0.67 | 0.913857 |
Target: 5'- --cGCgGCGCGgcAGUACgcccucauCACGCGCc -3' miRNA: 3'- guuCGgCGCGU--UCAUGau------GUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 37935 | 0.67 | 0.913857 |
Target: 5'- aCGAGgCGCGCcAGgGCgcagaACACGUGCUc -3' miRNA: 3'- -GUUCgGCGCGuUCaUGa----UGUGCGCGA- -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 26508 | 0.67 | 0.913857 |
Target: 5'- --cGCgGCGCGgcAGUACgcccucauCACGCGCc -3' miRNA: 3'- guuCGgCGCGU--UCAUGau------GUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 125060 | 0.67 | 0.913857 |
Target: 5'- gAGGUCGCGUucGUcGCU-CGCGUGCa -3' miRNA: 3'- gUUCGGCGCGuuCA-UGAuGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 2735 | 0.67 | 0.913857 |
Target: 5'- --cGCgGCGCAGGU----CGCGCGCg -3' miRNA: 3'- guuCGgCGCGUUCAugauGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 20325 | 0.67 | 0.907736 |
Target: 5'- gGGGCCGCGacgcguCGAGUGCagggcggGCACGgGCc -3' miRNA: 3'- gUUCGGCGC------GUUCAUGa------UGUGCgCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 153469 | 0.67 | 0.907736 |
Target: 5'- --uGCgCGUGCuGGUGCUcUACGCGCc -3' miRNA: 3'- guuCG-GCGCGuUCAUGAuGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 108640 | 0.67 | 0.907736 |
Target: 5'- -uGGCCGCcuaccgGCGGgcGUACUACggcaGCGCGCa -3' miRNA: 3'- guUCGGCG------CGUU--CAUGAUG----UGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 65538 | 0.67 | 0.907736 |
Target: 5'- cCAAGCgGCGCAA--GCUGCugGUcucggaGCUg -3' miRNA: 3'- -GUUCGgCGCGUUcaUGAUGugCG------CGA- -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 151691 | 0.67 | 0.907736 |
Target: 5'- aAAGacCCGCGCGGGUuuAUUcGCugGCGCa -3' miRNA: 3'- gUUC--GGCGCGUUCA--UGA-UGugCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 27960 | 0.67 | 0.907736 |
Target: 5'- --uGCgCGUGCuGGUGCUcUACGCGCc -3' miRNA: 3'- guuCG-GCGCGuUCAUGAuGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 94337 | 0.67 | 0.907736 |
Target: 5'- ---aCCGCGUggGU-CUcCGCGCGCg -3' miRNA: 3'- guucGGCGCGuuCAuGAuGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 93527 | 0.68 | 0.901371 |
Target: 5'- aAGGCCgaggcgggGCGCGGGUGCgGCGgCGUGCc -3' miRNA: 3'- gUUCGG--------CGCGUUCAUGaUGU-GCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 97313 | 0.68 | 0.901371 |
Target: 5'- aCGAGCuCGCggcggGCGGGUGC--CGCGCGCc -3' miRNA: 3'- -GUUCG-GCG-----CGUUCAUGauGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 151949 | 0.68 | 0.901371 |
Target: 5'- aCGAGgCGCGCcGGcGCUACgaggccgccgGCGCGCc -3' miRNA: 3'- -GUUCgGCGCGuUCaUGAUG----------UGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 30530 | 0.68 | 0.901371 |
Target: 5'- gGGGCCGCGCcgcGGgacggGCggGCGuCGCGCg -3' miRNA: 3'- gUUCGGCGCGu--UCa----UGa-UGU-GCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 57147 | 0.68 | 0.901371 |
Target: 5'- --cGCCGCGguGcugggGCUGCGCGaCGCg -3' miRNA: 3'- guuCGGCGCguUca---UGAUGUGC-GCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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