miRNA display CGI


Results 101 - 120 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 57147 0.68 0.901371
Target:  5'- --cGCCGCGguGcugggGCUGCGCGaCGCg -3'
miRNA:   3'- guuCGGCGCguUca---UGAUGUGC-GCGa -5'
21567 5' -54.1 NC_004812.1 + 56089 0.68 0.901371
Target:  5'- --cGCCGCGCccgacguGGgcgcCUACACGcCGCUg -3'
miRNA:   3'- guuCGGCGCGu------UCau--GAUGUGC-GCGA- -5'
21567 5' -54.1 NC_004812.1 + 31317 0.68 0.901371
Target:  5'- gCAGGCCuuccGCGCGcGGcGCUcucGCGCGCGCc -3'
miRNA:   3'- -GUUCGG----CGCGU-UCaUGA---UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 31362 0.68 0.901371
Target:  5'- cCGGGCCgccgGCGCGccugcGUGC-GCACGCGCc -3'
miRNA:   3'- -GUUCGG----CGCGUu----CAUGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 20403 0.68 0.901371
Target:  5'- aGAGCUgGCgGUggGUGCgGCAgGCGCUg -3'
miRNA:   3'- gUUCGG-CG-CGuuCAUGaUGUgCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 30530 0.68 0.901371
Target:  5'- gGGGCCGCGCcgcGGgacggGCggGCGuCGCGCg -3'
miRNA:   3'- gUUCGGCGCGu--UCa----UGa-UGU-GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 156038 0.68 0.901371
Target:  5'- gGGGCCGCGCcgcGGgacggGCggGCGuCGCGCg -3'
miRNA:   3'- gUUCGGCGCGu--UCa----UGa-UGU-GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 416 0.68 0.901371
Target:  5'- gCAGGCCuuccGCGCGcGGcGCUcucGCGCGCGCc -3'
miRNA:   3'- -GUUCGG----CGCGU-UCaUGA---UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 50076 0.68 0.901371
Target:  5'- --cGCUGCG-AGGUGggGCGCGUGCUg -3'
miRNA:   3'- guuCGGCGCgUUCAUgaUGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 79130 0.68 0.901371
Target:  5'- --cGCCGCGUucuGGUcgGCagGCugGCGCg -3'
miRNA:   3'- guuCGGCGCGu--UCA--UGa-UGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 131557 0.68 0.901371
Target:  5'- --cGCCGCGCGGcUAUcgACAcCGCGCa -3'
miRNA:   3'- guuCGGCGCGUUcAUGa-UGU-GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 151949 0.68 0.901371
Target:  5'- aCGAGgCGCGCcGGcGCUACgaggccgccgGCGCGCc -3'
miRNA:   3'- -GUUCgGCGCGuUCaUGAUG----------UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 461 0.68 0.901371
Target:  5'- cCGGGCCgccgGCGCGccugcGUGC-GCACGCGCc -3'
miRNA:   3'- -GUUCGG----CGCGUu----CAUGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 97313 0.68 0.901371
Target:  5'- aCGAGCuCGCggcggGCGGGUGC--CGCGCGCc -3'
miRNA:   3'- -GUUCG-GCG-----CGUUCAUGauGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 142588 0.68 0.900721
Target:  5'- -cGGCCGUGgu-GUACUGCugguggaugaccaACGCGCUg -3'
miRNA:   3'- guUCGGCGCguuCAUGAUG-------------UGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 76260 0.68 0.900068
Target:  5'- cCAGGCCcGCGCGcgccgccucgACgGCGCGCGCg -3'
miRNA:   3'- -GUUCGG-CGCGUuca-------UGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 31215 0.68 0.897435
Target:  5'- aGAGCgCGgGCAaccagcacgucgggaGGUGCgucCACGCGCUc -3'
miRNA:   3'- gUUCG-GCgCGU---------------UCAUGau-GUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 314 0.68 0.897435
Target:  5'- aGAGCgCGgGCAaccagcacgucgggaGGUGCgucCACGCGCUc -3'
miRNA:   3'- gUUCG-GCgCGU---------------UCAUGau-GUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 123576 0.68 0.894762
Target:  5'- gGGGCCGC-CGGGggcgGCggccgagcACACGCGCg -3'
miRNA:   3'- gUUCGGCGcGUUCa---UGa-------UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 47326 0.68 0.894762
Target:  5'- -cGGgCGCGCAGGUAggccuCUGCGguCGCGCc -3'
miRNA:   3'- guUCgGCGCGUUCAU-----GAUGU--GCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.