miRNA display CGI


Results 41 - 60 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 26441 0.68 0.901371
Target:  5'- aCGAGgCGCGCcGGcGCUACgaggccgccgGCGCGCc -3'
miRNA:   3'- -GUUCgGCGCGuUCaUGAUG----------UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 26508 0.67 0.913857
Target:  5'- --cGCgGCGCGgcAGUACgcccucauCACGCGCc -3'
miRNA:   3'- guuCGgCGCGU--UCAUGau------GUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 26813 0.66 0.94933
Target:  5'- --uGCgGCGCGcGUACgcgccccUGCugGCGCg -3'
miRNA:   3'- guuCGgCGCGUuCAUG-------AUGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 27099 0.73 0.659068
Target:  5'- --uGCCGCGCc-GUGCUGgAgGCGCUg -3'
miRNA:   3'- guuCGGCGCGuuCAUGAUgUgCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 27166 0.68 0.880833
Target:  5'- -cGGCCGCGCGcgccGUGCcGCcgcCGCGCg -3'
miRNA:   3'- guUCGGCGCGUu---CAUGaUGu--GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 27228 0.8 0.285311
Target:  5'- -uGGCUGCGCGAGcUGCgccGCACGCGCg -3'
miRNA:   3'- guUCGGCGCGUUC-AUGa--UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 27256 0.66 0.949758
Target:  5'- ----aCGCGCuGGUGCU-CAUGCGCc -3'
miRNA:   3'- guucgGCGCGuUCAUGAuGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 27356 0.73 0.60688
Target:  5'- --cGCCGCGCc---GCUGCugGCGCg -3'
miRNA:   3'- guuCGGCGCGuucaUGAUGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 27459 0.66 0.944917
Target:  5'- gAGGCCGCGCAcGUuCaGCGCcgccccgGCGCg -3'
miRNA:   3'- gUUCGGCGCGUuCAuGaUGUG-------CGCGa -5'
21567 5' -54.1 NC_004812.1 + 27803 0.68 0.879389
Target:  5'- --cGCCGCGCucgccuucgACccGCGCGCGCUg -3'
miRNA:   3'- guuCGGCGCGuuca-----UGa-UGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 27892 0.7 0.789135
Target:  5'- --cGCCGCGCGccucGGgcccGCUGCGcCGCGCc -3'
miRNA:   3'- guuCGGCGCGU----UCa---UGAUGU-GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 27960 0.67 0.907736
Target:  5'- --uGCgCGUGCuGGUGCUcUACGCGCc -3'
miRNA:   3'- guuCG-GCGCGuUCAUGAuGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 28342 0.69 0.837079
Target:  5'- --cGCCGCGC-AGUGCgACguccgcuggcccgccGCGCGCg -3'
miRNA:   3'- guuCGGCGCGuUCAUGaUG---------------UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 28432 0.68 0.880833
Target:  5'- --cGCgCGCGuCGAGgccgcCUGCGCGCGCc -3'
miRNA:   3'- guuCG-GCGC-GUUCau---GAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 28488 0.7 0.770213
Target:  5'- uGGGCCGCGgcgcCAAcGUGCgcuaccGCGCGCGCa -3'
miRNA:   3'- gUUCGGCGC----GUU-CAUGa-----UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 28557 0.8 0.271933
Target:  5'- --cGCCGCGCGAGUACcGC-CGCGCc -3'
miRNA:   3'- guuCGGCGCGUUCAUGaUGuGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 28655 0.71 0.760555
Target:  5'- --cGCCGCgGCGAGgcgcACUcgcaccgcgccuGCGCGCGCUg -3'
miRNA:   3'- guuCGGCG-CGUUCa---UGA------------UGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 28779 0.73 0.638199
Target:  5'- --cGCUGCGCGccuuCUGCGCGCGCg -3'
miRNA:   3'- guuCGGCGCGUucauGAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 28825 0.76 0.44719
Target:  5'- --cGCCGCGCcgcucGUGCUGCGCGCGg- -3'
miRNA:   3'- guuCGGCGCGuu---CAUGAUGUGCGCga -5'
21567 5' -54.1 NC_004812.1 + 28958 0.69 0.858226
Target:  5'- --uGCCccaGCGCAAcgcGUACUACAgCGUGCUc -3'
miRNA:   3'- guuCGG---CGCGUU---CAUGAUGU-GCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.