miRNA display CGI


Results 81 - 100 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 37935 0.67 0.913857
Target:  5'- aCGAGgCGCGCcAGgGCgcagaACACGUGCUc -3'
miRNA:   3'- -GUUCgGCGCGuUCaUGa----UGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 38803 0.7 0.797463
Target:  5'- aGGGUCGCccGCAGGUgucggggGCUGCGgCGCGCg -3'
miRNA:   3'- gUUCGGCG--CGUUCA-------UGAUGU-GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 39552 0.72 0.707623
Target:  5'- gCGGGCCGuCGCGggcgaugagcggcuGGUgcaccucgaACUGCACGCGCc -3'
miRNA:   3'- -GUUCGGC-GCGU--------------UCA---------UGAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 40201 0.66 0.935858
Target:  5'- gCGGGCCGCGgGGGcuCUGCGCGgGg- -3'
miRNA:   3'- -GUUCGGCGCgUUCauGAUGUGCgCga -5'
21567 5' -54.1 NC_004812.1 + 40414 0.67 0.930731
Target:  5'- cCAGGCCGCGUAGuaGCccgcCACgGCGCUc -3'
miRNA:   3'- -GUUCGGCGCGUUcaUGau--GUG-CGCGA- -5'
21567 5' -54.1 NC_004812.1 + 41123 0.68 0.865983
Target:  5'- cCGGGCCGcCGCccGGcGCggccGCACGCGCg -3'
miRNA:   3'- -GUUCGGC-GCGu-UCaUGa---UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 41208 0.79 0.328541
Target:  5'- --cGCCGCGCGGGgcggcgACUACGCGCuGCg -3'
miRNA:   3'- guuCGGCGCGUUCa-----UGAUGUGCG-CGa -5'
21567 5' -54.1 NC_004812.1 + 41813 0.68 0.880833
Target:  5'- uCGAGCUGauggacCGUAGGUGCUGCAUGgcCGCg -3'
miRNA:   3'- -GUUCGGC------GCGUUCAUGAUGUGC--GCGa -5'
21567 5' -54.1 NC_004812.1 + 41902 0.66 0.953501
Target:  5'- aCGAcGCCGUGCAuccGUACUcccccgcggccccGgGCGCGCc -3'
miRNA:   3'- -GUU-CGGCGCGUu--CAUGA-------------UgUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 42880 0.79 0.313612
Target:  5'- --cGCCGCGCAccUugUGCGCGCGCg -3'
miRNA:   3'- guuCGGCGCGUucAugAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 43044 0.72 0.690178
Target:  5'- gGGGCCGCagggGCAGGUugUGCugGaUGCa -3'
miRNA:   3'- gUUCGGCG----CGUUCAugAUGugC-GCGa -5'
21567 5' -54.1 NC_004812.1 + 43701 0.69 0.833705
Target:  5'- uCGGGCCgGCGCAGGU-CUGgGCG-GCUu -3'
miRNA:   3'- -GUUCGG-CGCGUUCAuGAUgUGCgCGA- -5'
21567 5' -54.1 NC_004812.1 + 44035 0.66 0.953905
Target:  5'- -cGGCCGCGCGucacCUGCGCgucggacgGCGCg -3'
miRNA:   3'- guUCGGCGCGUucauGAUGUG--------CGCGa -5'
21567 5' -54.1 NC_004812.1 + 44238 0.66 0.953905
Target:  5'- -uGGCCGcCGCGAGUcCgGCAgaGCGCg -3'
miRNA:   3'- guUCGGC-GCGUUCAuGaUGUg-CGCGa -5'
21567 5' -54.1 NC_004812.1 + 44393 0.68 0.865983
Target:  5'- --cGCCGCGCAGGgccagguucGCgauaACGCGCa -3'
miRNA:   3'- guuCGGCGCGUUCa--------UGaug-UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 45535 0.66 0.940737
Target:  5'- --cGUCGCGCcAGUagGCgcGCAUGCGCg -3'
miRNA:   3'- guuCGGCGCGuUCA--UGa-UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 45963 0.68 0.865983
Target:  5'- cCAGGCUGUGCA------GCACGCGCa -3'
miRNA:   3'- -GUUCGGCGCGUucaugaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 46310 0.68 0.887915
Target:  5'- gCGGGCCGCGCGGGcgACaGC-CGcCGCc -3'
miRNA:   3'- -GUUCGGCGCGUUCa-UGaUGuGC-GCGa -5'
21567 5' -54.1 NC_004812.1 + 46575 0.81 0.240698
Target:  5'- --cGCCGCGCAccgcccGGggACUACACGCGCUc -3'
miRNA:   3'- guuCGGCGCGU------UCa-UGAUGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 46855 0.66 0.940737
Target:  5'- gGGGuuGCGCGcGU---GCACGCGCc -3'
miRNA:   3'- gUUCggCGCGUuCAugaUGUGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.