miRNA display CGI


Results 101 - 120 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 47105 0.73 0.659068
Target:  5'- --cGCCaCGCGGGUgugcgggacGCUGCugGCGCUg -3'
miRNA:   3'- guuCGGcGCGUUCA---------UGAUGugCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 47171 0.7 0.789135
Target:  5'- cCAGGCCGCGCGGGUcacCUuaAUAUGCGa- -3'
miRNA:   3'- -GUUCGGCGCGUUCAu--GA--UGUGCGCga -5'
21567 5' -54.1 NC_004812.1 + 47326 0.68 0.894762
Target:  5'- -cGGgCGCGCAGGUAggccuCUGCGguCGCGCc -3'
miRNA:   3'- guUCgGCGCGUUCAU-----GAUGU--GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 48028 0.72 0.669472
Target:  5'- uUAGGCCGCGCugcccgaGCgggGCGCGCGCc -3'
miRNA:   3'- -GUUCGGCGCGuuca---UGa--UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 48104 0.67 0.925355
Target:  5'- --cGCCGUGCGccccGUGCgggcGCugGCGCc -3'
miRNA:   3'- guuCGGCGCGUu---CAUGa---UGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 49575 0.66 0.945369
Target:  5'- aCGAGCaGgGCcuGggGCUGCugGCGCa -3'
miRNA:   3'- -GUUCGgCgCGuuCa-UGAUGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 50076 0.68 0.901371
Target:  5'- --cGCUGCG-AGGUGggGCGCGUGCUg -3'
miRNA:   3'- guuCGGCGCgUUCAUgaUGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 51280 0.67 0.925355
Target:  5'- gGAGCUgGCGCAca---UGCGCGCGCg -3'
miRNA:   3'- gUUCGG-CGCGUucaugAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 51552 0.7 0.789135
Target:  5'- cCAGGCCGUcccgGCGAGc---GCACGCGCa -3'
miRNA:   3'- -GUUCGGCG----CGUUCaugaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 53021 0.66 0.953905
Target:  5'- cCGGGgCGCGCGG-----GCACGCGCa -3'
miRNA:   3'- -GUUCgGCGCGUUcaugaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 53119 0.71 0.760555
Target:  5'- -cGGCCGuCGCGgagcGGUACUACcgcgagacgGCGCGCc -3'
miRNA:   3'- guUCGGC-GCGU----UCAUGAUG---------UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 53284 0.69 0.855857
Target:  5'- -cAGCCGCGCGAacucgaccgaggacGUGguCUugAUGCGCUc -3'
miRNA:   3'- guUCGGCGCGUU--------------CAU--GAugUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 53439 0.66 0.953905
Target:  5'- gGGGCCGCGCugacgGCgGCcccCGCGCUc -3'
miRNA:   3'- gUUCGGCGCGuuca-UGaUGu--GCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 55492 0.66 0.951445
Target:  5'- cCGAGCUGCGCGccaugcucgaccgcgAGUGCcGCGuggcCGUGCg -3'
miRNA:   3'- -GUUCGGCGCGU---------------UCAUGaUGU----GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 55615 0.67 0.913857
Target:  5'- --cGCCGCGCGAGgcgGCcuuucugGgGCGCGUc -3'
miRNA:   3'- guuCGGCGCGUUCa--UGa------UgUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 56089 0.68 0.901371
Target:  5'- --cGCCGCGCccgacguGGgcgcCUACACGcCGCUg -3'
miRNA:   3'- guuCGGCGCGu------UCau--GAUGUGC-GCGA- -5'
21567 5' -54.1 NC_004812.1 + 56309 0.68 0.894762
Target:  5'- -cAGCaCGCGCAGcGcGC-GCGCGCGCg -3'
miRNA:   3'- guUCG-GCGCGUU-CaUGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 57147 0.68 0.901371
Target:  5'- --cGCCGCGguGcugggGCUGCGCGaCGCg -3'
miRNA:   3'- guuCGGCGCguUca---UGAUGUGC-GCGa -5'
21567 5' -54.1 NC_004812.1 + 57587 0.68 0.880833
Target:  5'- aCGGGgCGCGCGAGgcccgccgACUACA-GCGUg -3'
miRNA:   3'- -GUUCgGCGCGUUCa-------UGAUGUgCGCGa -5'
21567 5' -54.1 NC_004812.1 + 58127 0.69 0.833705
Target:  5'- --cGCCGCcccacccaCGAcccuGUACUACACGCGCa -3'
miRNA:   3'- guuCGGCGc-------GUU----CAUGAUGUGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.