miRNA display CGI


Results 21 - 40 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 153850 0.69 0.837079
Target:  5'- --cGCCGCGC-AGUGCgACguccgcuggcccgccGCGCGCg -3'
miRNA:   3'- guuCGGCGCGuUCAUGaUG---------------UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 153469 0.67 0.907736
Target:  5'- --uGCgCGUGCuGGUGCUcUACGCGCc -3'
miRNA:   3'- guuCG-GCGCGuUCAUGAuGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 153400 0.7 0.789135
Target:  5'- --cGCCGCGCGccucGGgcccGCUGCGcCGCGCc -3'
miRNA:   3'- guuCGGCGCGU----UCa---UGAUGU-GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 153311 0.68 0.879389
Target:  5'- --cGCCGCGCucgccuucgACccGCGCGCGCUg -3'
miRNA:   3'- guuCGGCGCGuuca-----UGa-UGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 152864 0.73 0.60688
Target:  5'- --cGCCGCGCc---GCUGCugGCGCg -3'
miRNA:   3'- guuCGGCGCGuucaUGAUGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 152764 0.66 0.949758
Target:  5'- ----aCGCGCuGGUGCU-CAUGCGCc -3'
miRNA:   3'- guucgGCGCGuUCAUGAuGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 152736 0.8 0.285311
Target:  5'- -uGGCUGCGCGAGcUGCgccGCACGCGCg -3'
miRNA:   3'- guUCGGCGCGUUC-AUGa--UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 152675 0.73 0.659068
Target:  5'- -cGGCCGCGCGcgccGUGCcGCGcCGCGCg -3'
miRNA:   3'- guUCGGCGCGUu---CAUGaUGU-GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 152615 0.65 0.957434
Target:  5'- gGAGCgGCggcgagaGCAGGUGCccggGCcgGCGCGCg -3'
miRNA:   3'- gUUCGgCG-------CGUUCAUGa---UG--UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 152608 0.73 0.659068
Target:  5'- --uGCCGCGCc-GUGCUGgAgGCGCUg -3'
miRNA:   3'- guuCGGCGCGuuCAUGAUgUgCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 152321 0.66 0.94933
Target:  5'- --uGCgGCGCGcGUACgcgccccUGCugGCGCg -3'
miRNA:   3'- guuCGgCGCGUuCAUG-------AUGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 152244 0.7 0.816391
Target:  5'- cCAGGgCGCGCGccaUGUUGCACGCGCg -3'
miRNA:   3'- -GUUCgGCGCGUuc-AUGAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 152056 0.66 0.935356
Target:  5'- aGGGUgGCGCGAGUccagacuguggaaGCUGCggccgcccagcaGCGCGCc -3'
miRNA:   3'- gUUCGgCGCGUUCA-------------UGAUG------------UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 152016 0.67 0.913857
Target:  5'- --cGCgGCGCGgcAGUACgcccucauCACGCGCc -3'
miRNA:   3'- guuCGgCGCGU--UCAUGau------GUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 151949 0.68 0.901371
Target:  5'- aCGAGgCGCGCcGGcGCUACgaggccgccgGCGCGCc -3'
miRNA:   3'- -GUUCgGCGCGuUCaUGAUG----------UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 151696 0.8 0.292192
Target:  5'- cCGGGCCGCaGCGAGcgGCgGCGCGCGCg -3'
miRNA:   3'- -GUUCGGCG-CGUUCa-UGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 151691 0.67 0.907736
Target:  5'- aAAGacCCGCGCGGGUuuAUUcGCugGCGCa -3'
miRNA:   3'- gUUC--GGCGCGUUCA--UGA-UGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 145389 0.66 0.953905
Target:  5'- uGGGCCuGCGuCAccUGCcgGCGCGCGCg -3'
miRNA:   3'- gUUCGG-CGC-GUucAUGa-UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 144723 0.67 0.913857
Target:  5'- gAGGUCGCGCAcGUGCgcgGCGucacgguuucccUGCGCa -3'
miRNA:   3'- gUUCGGCGCGUuCAUGa--UGU------------GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 144242 0.66 0.949758
Target:  5'- -cGGCCGCGCG---GCcGgGCGCGCc -3'
miRNA:   3'- guUCGGCGCGUucaUGaUgUGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.