miRNA display CGI


Results 41 - 60 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 143447 0.73 0.627753
Target:  5'- gGAGCUGCGCGuGUugUcucGCGCGuCGCUg -3'
miRNA:   3'- gUUCGGCGCGUuCAugA---UGUGC-GCGA- -5'
21567 5' -54.1 NC_004812.1 + 142588 0.68 0.900721
Target:  5'- -cGGCCGUGgu-GUACUGCugguggaugaccaACGCGCUg -3'
miRNA:   3'- guUCGGCGCguuCAUGAUG-------------UGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 141987 0.7 0.811058
Target:  5'- gAGGCCGCGCGGGUGCcccggcugcagugguUccgggacgugGC-CGCGCUg -3'
miRNA:   3'- gUUCGGCGCGUUCAUG---------------A----------UGuGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 141785 0.75 0.524749
Target:  5'- -cGGCCGCGCGGGgggGCggGC-CGCGCg -3'
miRNA:   3'- guUCGGCGCGUUCa--UGa-UGuGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 141460 0.7 0.802035
Target:  5'- cCAGGUCGUGCGGGgagcccccgaggcgACgcggccggACGCGCGCUa -3'
miRNA:   3'- -GUUCGGCGCGUUCa-------------UGa-------UGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 141404 0.67 0.927536
Target:  5'- cCAGGCCGCGCGcaaAGUccaGCaGCgaggcccggagggcgGCGCGCc -3'
miRNA:   3'- -GUUCGGCGCGU---UCA---UGaUG---------------UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 140648 0.66 0.945369
Target:  5'- --cGCCGCGCGGcgGCgccaACGCGCc -3'
miRNA:   3'- guuCGGCGCGUUcaUGaug-UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 140600 0.7 0.816391
Target:  5'- aAGGCCugGCGgAGcUGCUGCugGCGCg -3'
miRNA:   3'- gUUCGG--CGCgUUcAUGAUGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 140422 0.66 0.953905
Target:  5'- --cGCCGCGC----GCUGCugGCGa- -3'
miRNA:   3'- guuCGGCGCGuucaUGAUGugCGCga -5'
21567 5' -54.1 NC_004812.1 + 140007 0.7 0.816391
Target:  5'- cCAGGuCUGUcagGUAGGU-CUGCACGCGCg -3'
miRNA:   3'- -GUUC-GGCG---CGUUCAuGAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 137573 0.67 0.925355
Target:  5'- --cGCCGCGgcCGAGagGCUGCcgccCGCGCUg -3'
miRNA:   3'- guuCGGCGC--GUUCa-UGAUGu---GCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 137193 0.67 0.91973
Target:  5'- -cGGCCGCGCG---GC--CACGCGCa -3'
miRNA:   3'- guUCGGCGCGUucaUGauGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 137093 0.68 0.880833
Target:  5'- --cGCCGCGC-GGUu---CGCGCGCg -3'
miRNA:   3'- guuCGGCGCGuUCAugauGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 136928 0.67 0.930731
Target:  5'- --cGCCGCGCuGG-ACgugaACGCGCa -3'
miRNA:   3'- guuCGGCGCGuUCaUGaug-UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 136773 0.67 0.930731
Target:  5'- -uGGCgCGCGCu-GUACgcgUGCGCGCUg -3'
miRNA:   3'- guUCG-GCGCGuuCAUGau-GUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 136279 0.72 0.704557
Target:  5'- --cGCCuGCGCGcgcccgcgugggggcGGUGcCUGCGCGCGCg -3'
miRNA:   3'- guuCGG-CGCGU---------------UCAU-GAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 133408 0.66 0.945369
Target:  5'- uGGGCgGCG-AAGUACgucagACACGCGa- -3'
miRNA:   3'- gUUCGgCGCgUUCAUGa----UGUGCGCga -5'
21567 5' -54.1 NC_004812.1 + 132825 0.74 0.596469
Target:  5'- gGAGCCGCGCAcgcgucGGaugGCcgaGCGCGCGCg -3'
miRNA:   3'- gUUCGGCGCGU------UCa--UGa--UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 131762 0.66 0.949758
Target:  5'- -cAGCCGCGCcgcccGCgGCGCGUGCc -3'
miRNA:   3'- guUCGGCGCGuuca-UGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 131557 0.68 0.901371
Target:  5'- --cGCCGCGCGGcUAUcgACAcCGCGCa -3'
miRNA:   3'- guuCGGCGCGUUcAUGa-UGU-GCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.