Results 61 - 80 of 297 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21567 | 5' | -54.1 | NC_004812.1 | + | 130555 | 0.66 | 0.953905 |
Target: 5'- gGGGgCGCGCGAGg---GCGcCGCGCc -3' miRNA: 3'- gUUCgGCGCGUUCaugaUGU-GCGCGa -5' |
|||||||
21567 | 5' | -54.1 | NC_004812.1 | + | 130233 | 0.69 | 0.850256 |
Target: 5'- cCAGGCCGCc---GUAgaGCACGCGCc -3' miRNA: 3'- -GUUCGGCGcguuCAUgaUGUGCGCGa -5' |
|||||||
21567 | 5' | -54.1 | NC_004812.1 | + | 129434 | 0.77 | 0.402072 |
Target: 5'- gGGGCCGCGCGGcgGCggcacgGCGCGCGCg -3' miRNA: 3'- gUUCGGCGCGUUcaUGa-----UGUGCGCGa -5' |
|||||||
21567 | 5' | -54.1 | NC_004812.1 | + | 128773 | 0.72 | 0.690178 |
Target: 5'- gCGGGCCGCagcgcgcggcgaGCGAGgcCaGCGCGCGCg -3' miRNA: 3'- -GUUCGGCG------------CGUUCauGaUGUGCGCGa -5' |
|||||||
21567 | 5' | -54.1 | NC_004812.1 | + | 128646 | 0.66 | 0.940737 |
Target: 5'- -cAGCgGCGCGuAGaGCaccaGCACGCGCa -3' miRNA: 3'- guUCGgCGCGU-UCaUGa---UGUGCGCGa -5' |
|||||||
21567 | 5' | -54.1 | NC_004812.1 | + | 128243 | 0.67 | 0.913857 |
Target: 5'- --cGCgGCGCAGGU----CGCGCGCg -3' miRNA: 3'- guuCGgCGCGUUCAugauGUGCGCGa -5' |
|||||||
21567 | 5' | -54.1 | NC_004812.1 | + | 128172 | 0.76 | 0.456547 |
Target: 5'- gAGGCgCGCGCAGGcgGCcucgACGCGCGCg -3' miRNA: 3'- gUUCG-GCGCGUUCa-UGa---UGUGCGCGa -5' |
|||||||
21567 | 5' | -54.1 | NC_004812.1 | + | 127795 | 0.68 | 0.865217 |
Target: 5'- aCGAGCgGCGCGgcgucggGGUccgGCUcgagcaggGCGCGCGCg -3' miRNA: 3'- -GUUCGgCGCGU-------UCA---UGA--------UGUGCGCGa -5' |
|||||||
21567 | 5' | -54.1 | NC_004812.1 | + | 127302 | 0.66 | 0.953905 |
Target: 5'- gGAGCgCGUGCAucGGgccccgGCUGCGCGC-CUc -3' miRNA: 3'- gUUCG-GCGCGU--UCa-----UGAUGUGCGcGA- -5' |
|||||||
21567 | 5' | -54.1 | NC_004812.1 | + | 127118 | 0.66 | 0.953905 |
Target: 5'- cCGGGCgcccCGCGCGAGggACcgUGCGCGCGg- -3' miRNA: 3'- -GUUCG----GCGCGUUCa-UG--AUGUGCGCga -5' |
|||||||
21567 | 5' | -54.1 | NC_004812.1 | + | 127028 | 0.68 | 0.87352 |
Target: 5'- --cGCCGCGCGAGg---GCAUGcCGCc -3' miRNA: 3'- guuCGGCGCGUUCaugaUGUGC-GCGa -5' |
|||||||
21567 | 5' | -54.1 | NC_004812.1 | + | 126526 | 0.67 | 0.925355 |
Target: 5'- gGGGCCGCGCccccgcGAGggcccgGCcgcccGCGCGCGCc -3' miRNA: 3'- gUUCGGCGCG------UUCa-----UGa----UGUGCGCGa -5' |
|||||||
21567 | 5' | -54.1 | NC_004812.1 | + | 125684 | 0.73 | 0.64864 |
Target: 5'- --cGCCGCGCGuuUAUUuucGCGCGCGCg -3' miRNA: 3'- guuCGGCGCGUucAUGA---UGUGCGCGa -5' |
|||||||
21567 | 5' | -54.1 | NC_004812.1 | + | 125629 | 0.68 | 0.880833 |
Target: 5'- -cGGCCcgucccuCGCGAGUGC-GCGCGCGUg -3' miRNA: 3'- guUCGGc------GCGUUCAUGaUGUGCGCGa -5' |
|||||||
21567 | 5' | -54.1 | NC_004812.1 | + | 125280 | 0.77 | 0.419774 |
Target: 5'- gCGGGCgCGCGCGAGaGCgcCGCGCGCg -3' miRNA: 3'- -GUUCG-GCGCGUUCaUGauGUGCGCGa -5' |
|||||||
21567 | 5' | -54.1 | NC_004812.1 | + | 125132 | 0.72 | 0.690178 |
Target: 5'- gGAGCCGCGCccgcgGCUccacgcggccGCGCGCGCc -3' miRNA: 3'- gUUCGGCGCGuuca-UGA----------UGUGCGCGa -5' |
|||||||
21567 | 5' | -54.1 | NC_004812.1 | + | 125060 | 0.67 | 0.913857 |
Target: 5'- gAGGUCGCGUucGUcGCU-CGCGUGCa -3' miRNA: 3'- gUUCGGCGCGuuCA-UGAuGUGCGCGa -5' |
|||||||
21567 | 5' | -54.1 | NC_004812.1 | + | 124221 | 0.68 | 0.894088 |
Target: 5'- gAGGCCGCggcgcaccuggcgGCGGGccugGCgggggGCGCGCGCg -3' miRNA: 3'- gUUCGGCG-------------CGUUCa---UGa----UGUGCGCGa -5' |
|||||||
21567 | 5' | -54.1 | NC_004812.1 | + | 124138 | 0.67 | 0.925355 |
Target: 5'- aCGGGCCGCGC-----CU-CACGCGCc -3' miRNA: 3'- -GUUCGGCGCGuucauGAuGUGCGCGa -5' |
|||||||
21567 | 5' | -54.1 | NC_004812.1 | + | 124059 | 0.66 | 0.949758 |
Target: 5'- gGGGCCGCgGCcAGcUGCgccCGCGUGCUc -3' miRNA: 3'- gUUCGGCG-CGuUC-AUGau-GUGCGCGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home