miRNA display CGI


Results 81 - 100 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 123881 0.66 0.935858
Target:  5'- --cGCCGCGUAcaUGCcGCgggACGCGCUg -3'
miRNA:   3'- guuCGGCGCGUucAUGaUG---UGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 123576 0.68 0.894762
Target:  5'- gGGGCCGC-CGGGggcgGCggccgagcACACGCGCg -3'
miRNA:   3'- gUUCGGCGcGUUCa---UGa-------UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 122922 0.71 0.740893
Target:  5'- -cGGCCGCGaCGccGGUGCccgagGCGCGCGUg -3'
miRNA:   3'- guUCGGCGC-GU--UCAUGa----UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 122458 0.68 0.883694
Target:  5'- uGAGCUGCGCGgucaGGUACUcCACcgggucggucuggagGCGCa -3'
miRNA:   3'- gUUCGGCGCGU----UCAUGAuGUG---------------CGCGa -5'
21567 5' -54.1 NC_004812.1 + 121714 0.65 0.957434
Target:  5'- gGAGCgGCggcgagaGCAGGUGCccggGCcgGCGCGCg -3'
miRNA:   3'- gUUCGgCG-------CGUUCAUGa---UG--UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 121343 0.7 0.816391
Target:  5'- cCAGGgCGCGCGccaUGUUGCACGCGCg -3'
miRNA:   3'- -GUUCgGCGCGUuc-AUGAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 121155 0.66 0.935356
Target:  5'- aGGGUgGCGCGAGUccagacuguggaaGCUGCggccgcccagcaGCGCGCc -3'
miRNA:   3'- gUUCGgCGCGUUCA-------------UGAUG------------UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 120789 0.67 0.930731
Target:  5'- aAAGaccCCGCGCGGGUuuAUUcGCugGCGCa -3'
miRNA:   3'- gUUC---GGCGCGUUCA--UGA-UGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 120778 0.68 0.87352
Target:  5'- --uGCUGCGCAAGUACcGCgacgGCGaCGCc -3'
miRNA:   3'- guuCGGCGCGUUCAUGaUG----UGC-GCGa -5'
21567 5' -54.1 NC_004812.1 + 118985 0.66 0.953905
Target:  5'- --cGCCGCGagca-GCUGgACGCGCa -3'
miRNA:   3'- guuCGGCGCguucaUGAUgUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 117784 0.67 0.930731
Target:  5'- -cGGCCGCGCcg-----GCGCGCGCc -3'
miRNA:   3'- guUCGGCGCGuucaugaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 117293 0.69 0.84208
Target:  5'- -cGGCCGaC-CAGaUGCUGCACGUGCUa -3'
miRNA:   3'- guUCGGC-GcGUUcAUGAUGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 116193 0.66 0.953905
Target:  5'- --cGCCGUgGCGGGcUACUACGCG-GCc -3'
miRNA:   3'- guuCGGCG-CGUUC-AUGAUGUGCgCGa -5'
21567 5' -54.1 NC_004812.1 + 115475 0.72 0.679846
Target:  5'- --cGCCGCGCGcGUGCgGC-CGCGCc -3'
miRNA:   3'- guuCGGCGCGUuCAUGaUGuGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 114699 0.66 0.935858
Target:  5'- gGGGCCGCGgggGAGUACgugaUGCACgGCGUc -3'
miRNA:   3'- gUUCGGCGCg--UUCAUG----AUGUG-CGCGa -5'
21567 5' -54.1 NC_004812.1 + 114423 0.7 0.779743
Target:  5'- ---aCCGCGCGGGUggACgGCGCGUGCg -3'
miRNA:   3'- guucGGCGCGUUCA--UGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 112783 0.66 0.940737
Target:  5'- gCGAGCCGCGCGGcgGCUcccccgucggGCguguggGCGCGCc -3'
miRNA:   3'- -GUUCGGCGCGUUcaUGA----------UG------UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 112311 0.67 0.917994
Target:  5'- uCGAGUCGCGCcucGGgcgGCUGgccgcggaggcgguCGCGCGCg -3'
miRNA:   3'- -GUUCGGCGCGu--UCa--UGAU--------------GUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 111746 0.8 0.271933
Target:  5'- --cGCCGCGCucGUGC-GCGCGCGCUa -3'
miRNA:   3'- guuCGGCGCGuuCAUGaUGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 110633 0.74 0.586085
Target:  5'- --cGCCGgaCGCGGGggaGCUGCGCGUGCUg -3'
miRNA:   3'- guuCGGC--GCGUUCa--UGAUGUGCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.