miRNA display CGI


Results 101 - 120 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 110016 0.69 0.833705
Target:  5'- --cGUCGCGCcgcuccuGUGCUACccggccGCGCGCUa -3'
miRNA:   3'- guuCGGCGCGuu-----CAUGAUG------UGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 109899 0.66 0.935858
Target:  5'- gGAGCCGauucCGUucGAGcgGCUGCACGuCGCg -3'
miRNA:   3'- gUUCGGC----GCG--UUCa-UGAUGUGC-GCGa -5'
21567 5' -54.1 NC_004812.1 + 109741 0.67 0.925355
Target:  5'- gGGGCUGCgacugacgugGCGcGUGC-ACGCGCGCa -3'
miRNA:   3'- gUUCGGCG----------CGUuCAUGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 109711 0.66 0.940737
Target:  5'- --cGCCGCGCug--GCgGC-CGCGCUg -3'
miRNA:   3'- guuCGGCGCGuucaUGaUGuGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 109458 0.68 0.894762
Target:  5'- aGGGCgGCGCGGGgGCgccCGCGgGCUg -3'
miRNA:   3'- gUUCGgCGCGUUCaUGau-GUGCgCGA- -5'
21567 5' -54.1 NC_004812.1 + 108640 0.67 0.907736
Target:  5'- -uGGCCGCcuaccgGCGGgcGUACUACggcaGCGCGCa -3'
miRNA:   3'- guUCGGCG------CGUU--CAUGAUG----UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 108532 0.69 0.847824
Target:  5'- -cGGCCGCcgaguacgcgcccgGCGAGUcGCUGCGCuCGCUg -3'
miRNA:   3'- guUCGGCG--------------CGUUCA-UGAUGUGcGCGA- -5'
21567 5' -54.1 NC_004812.1 + 108176 0.66 0.940737
Target:  5'- gGGGCC-CGCGAGcgAgaAgGCGCGCUa -3'
miRNA:   3'- gUUCGGcGCGUUCa-UgaUgUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 106713 0.69 0.82514
Target:  5'- --cGCUGCGC--GUGCUGCugGCGg- -3'
miRNA:   3'- guuCGGCGCGuuCAUGAUGugCGCga -5'
21567 5' -54.1 NC_004812.1 + 106224 0.68 0.894762
Target:  5'- ---uCUGCGC-GGUGgUGCACGCGCc -3'
miRNA:   3'- guucGGCGCGuUCAUgAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 105882 0.68 0.887915
Target:  5'- -uGGgCGCGC-GGUGC-GCugGCGCUc -3'
miRNA:   3'- guUCgGCGCGuUCAUGaUGugCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 105116 0.71 0.730908
Target:  5'- -cGGCCGgGUAcgGGUAUUcgACGCGCGCg -3'
miRNA:   3'- guUCGGCgCGU--UCAUGA--UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 104742 0.66 0.955497
Target:  5'- -cGGCCGCGCAgaaGGUGCgcuuguugaacccgGCgACGCGg- -3'
miRNA:   3'- guUCGGCGCGU---UCAUGa-------------UG-UGCGCga -5'
21567 5' -54.1 NC_004812.1 + 103497 0.66 0.953905
Target:  5'- -cGGCCGC-CGGGUGa---GCGCGCg -3'
miRNA:   3'- guUCGGCGcGUUCAUgaugUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 102599 0.68 0.880833
Target:  5'- gAGGCaCGUGCGcGUACgACGCGCGg- -3'
miRNA:   3'- gUUCG-GCGCGUuCAUGaUGUGCGCga -5'
21567 5' -54.1 NC_004812.1 + 100904 0.76 0.456547
Target:  5'- --cGCCgaGCGCGGGUGCagGCGCGCGCc -3'
miRNA:   3'- guuCGG--CGCGUUCAUGa-UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 100340 0.68 0.87352
Target:  5'- gCGGGCCGcCGCGGGcgagGCgcagGgGCGCGCc -3'
miRNA:   3'- -GUUCGGC-GCGUUCa---UGa---UgUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 100300 0.73 0.638199
Target:  5'- --cGCgCGCGCGcGcGCUGCGCGUGCUg -3'
miRNA:   3'- guuCG-GCGCGUuCaUGAUGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 100019 0.7 0.788203
Target:  5'- --cGCCGCGCGAucGUcGCUGCAuggcggcCGCGCg -3'
miRNA:   3'- guuCGGCGCGUU--CA-UGAUGU-------GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 99002 0.68 0.865983
Target:  5'- aGGGUCGCguucaGCAGGUACUGgGCGUGgUg -3'
miRNA:   3'- gUUCGGCG-----CGUUCAUGAUgUGCGCgA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.