miRNA display CGI


Results 41 - 60 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 154976 0.78 0.368126
Target:  5'- gCGGGCCGCGCGGG-ACc-CGCGCGCa -3'
miRNA:   3'- -GUUCGGCGCGUUCaUGauGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 42880 0.79 0.313612
Target:  5'- --cGCCGCGCAccUugUGCGCGCGCg -3'
miRNA:   3'- guuCGGCGCGUucAugAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 151696 0.8 0.292192
Target:  5'- cCGGGCCGCaGCGAGcgGCgGCGCGCGCg -3'
miRNA:   3'- -GUUCGGCG-CGUUCa-UGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 152736 0.8 0.285311
Target:  5'- -uGGCUGCGCGAGcUGCgccGCACGCGCg -3'
miRNA:   3'- guUCGGCGCGUUC-AUGa--UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 154065 0.8 0.271933
Target:  5'- --cGCCGCGCGAGUACcGC-CGCGCc -3'
miRNA:   3'- guuCGGCGCGUUCAUGaUGuGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 15324 0.74 0.584012
Target:  5'- gCAGGCCGCGCGAGggggaagugACGCaGCGCc -3'
miRNA:   3'- -GUUCGGCGCGUUCauga-----UGUG-CGCGa -5'
21567 5' -54.1 NC_004812.1 + 110633 0.74 0.586085
Target:  5'- --cGCCGgaCGCGGGggaGCUGCGCGUGCUg -3'
miRNA:   3'- guuCGGC--GCGUUCa--UGAUGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 128773 0.72 0.690178
Target:  5'- gCGGGCCGCagcgcgcggcgaGCGAGgcCaGCGCGCGCg -3'
miRNA:   3'- -GUUCGGCG------------CGUUCauGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 115475 0.72 0.679846
Target:  5'- --cGCCGCGCGcGUGCgGC-CGCGCc -3'
miRNA:   3'- guuCGGCGCGUuCAUGaUGuGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 155738 0.72 0.67881
Target:  5'- gGGGCgCGCGCGGGcgggGCUcgcggccgcggggACACGCGCg -3'
miRNA:   3'- gUUCG-GCGCGUUCa---UGA-------------UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 152675 0.73 0.659068
Target:  5'- -cGGCCGCGCGcgccGUGCcGCGcCGCGCg -3'
miRNA:   3'- guUCGGCGCGUu---CAUGaUGU-GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 152608 0.73 0.659068
Target:  5'- --uGCCGCGCc-GUGCUGgAgGCGCUg -3'
miRNA:   3'- guuCGGCGCGuuCAUGAUgUgCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 47105 0.73 0.659068
Target:  5'- --cGCCaCGCGGGUgugcgggacGCUGCugGCGCUg -3'
miRNA:   3'- guuCGGcGCGUUCA---------UGAUGugCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 64661 0.73 0.659068
Target:  5'- --cGCaaCGCGCGAGUACgUGCACgaGCGCUg -3'
miRNA:   3'- guuCG--GCGCGUUCAUG-AUGUG--CGCGA- -5'
21567 5' -54.1 NC_004812.1 + 125684 0.73 0.64864
Target:  5'- --cGCCGCGCGuuUAUUuucGCGCGCGCg -3'
miRNA:   3'- guuCGGCGCGUucAUGA---UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 154287 0.73 0.638199
Target:  5'- --cGCUGCGCGccuuCUGCGCGCGCg -3'
miRNA:   3'- guuCGGCGCGUucauGAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 143447 0.73 0.627753
Target:  5'- gGAGCUGCGCGuGUugUcucGCGCGuCGCUg -3'
miRNA:   3'- gUUCGGCGCGUuCAugA---UGUGC-GCGA- -5'
21567 5' -54.1 NC_004812.1 + 26275 0.73 0.617311
Target:  5'- -cGGCCGCGCGGGUGCccCGCG-GCg -3'
miRNA:   3'- guUCGGCGCGUUCAUGauGUGCgCGa -5'
21567 5' -54.1 NC_004812.1 + 152864 0.73 0.60688
Target:  5'- --cGCCGCGCc---GCUGCugGCGCg -3'
miRNA:   3'- guuCGGCGCGuucaUGAUGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 16498 0.74 0.596469
Target:  5'- ---uUCGCGUccGUGCUGCGCGCGCc -3'
miRNA:   3'- guucGGCGCGuuCAUGAUGUGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.