Results 101 - 120 of 297 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21567 | 5' | -54.1 | NC_004812.1 | + | 155848 | 0.69 | 0.82514 |
Target: 5'- gGGGCCcgcgGCGCcGGgagGCgagGCGCGCGCg -3' miRNA: 3'- gUUCGG----CGCGuUCa--UGa--UGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 106713 | 0.69 | 0.82514 |
Target: 5'- --cGCUGCGC--GUGCUGCugGCGg- -3' miRNA: 3'- guuCGGCGCGuuCAUGAUGugCGCga -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 43701 | 0.69 | 0.833705 |
Target: 5'- uCGGGCCgGCGCAGGU-CUGgGCG-GCUu -3' miRNA: 3'- -GUUCGG-CGCGUUCAuGAUgUGCgCGA- -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 153850 | 0.69 | 0.837079 |
Target: 5'- --cGCCGCGC-AGUGCgACguccgcuggcccgccGCGCGCg -3' miRNA: 3'- guuCGGCGCGuUCAUGaUG---------------UGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 65091 | 0.69 | 0.84208 |
Target: 5'- -uGGCCGCGCGccccgcggaggAGUG--GCugGCGCg -3' miRNA: 3'- guUCGGCGCGU-----------UCAUgaUGugCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 100019 | 0.7 | 0.788203 |
Target: 5'- --cGCCGCGCGAucGUcGCUGCAuggcggcCGCGCg -3' miRNA: 3'- guuCGGCGCGUU--CA-UGAUGU-------GCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 114423 | 0.7 | 0.779743 |
Target: 5'- ---aCCGCGCGGGUggACgGCGCGUGCg -3' miRNA: 3'- guucGGCGCGUUCA--UGaUGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 39552 | 0.72 | 0.707623 |
Target: 5'- gCGGGCCGuCGCGggcgaugagcggcuGGUgcaccucgaACUGCACGCGCc -3' miRNA: 3'- -GUUCGGC-GCGU--------------UCA---------UGAUGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 156138 | 0.72 | 0.710682 |
Target: 5'- aCGGGCCGCGCGgacgcGGgGCgcgGgACGCGCg -3' miRNA: 3'- -GUUCGGCGCGU-----UCaUGa--UgUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 98637 | 0.71 | 0.71881 |
Target: 5'- -cGGCCGCGCugcgcccggGCgcgACGCGCGCa -3' miRNA: 3'- guUCGGCGCGuuca-----UGa--UGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 62891 | 0.71 | 0.720835 |
Target: 5'- --cGCCGCGC--GUGCccuacuaccgcgUGCACGCGCg -3' miRNA: 3'- guuCGGCGCGuuCAUG------------AUGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 82809 | 0.71 | 0.720835 |
Target: 5'- -cGGCgGCGUccGUGC-GCACGCGCg -3' miRNA: 3'- guUCGgCGCGuuCAUGaUGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 9234 | 0.71 | 0.730908 |
Target: 5'- gAGGCCcCGCGuuccaucgACUACGCGCGCa -3' miRNA: 3'- gUUCGGcGCGUuca-----UGAUGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 105116 | 0.71 | 0.730908 |
Target: 5'- -cGGCCGgGUAcgGGUAUUcgACGCGCGCg -3' miRNA: 3'- guUCGGCgCGU--UCAUGA--UGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 154805 | 0.71 | 0.740893 |
Target: 5'- gCGAGgCGCGCAgccGGggcccgaUGCACGCGCUc -3' miRNA: 3'- -GUUCgGCGCGU---UCaug----AUGUGCGCGA- -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 20295 | 0.71 | 0.740893 |
Target: 5'- uGGGCgGCGCGccGGcGCaGCGCGCGCg -3' miRNA: 3'- gUUCGgCGCGU--UCaUGaUGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 71973 | 0.71 | 0.750778 |
Target: 5'- --cGCCGCGgGAG-GCU-CACGCGCc -3' miRNA: 3'- guuCGGCGCgUUCaUGAuGUGCGCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 154163 | 0.71 | 0.760555 |
Target: 5'- --cGCCGCgGCGAGgcgcACUcgcaccgcgccuGCGCGCGCUg -3' miRNA: 3'- guuCGGCG-CGUUCa---UGA------------UGUGCGCGA- -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 23497 | 0.7 | 0.769253 |
Target: 5'- gGGGCUGCugucgcacuacguGCGGGUGCUGCugGgGCc -3' miRNA: 3'- gUUCGGCG-------------CGUUCAUGAUGugCgCGa -5' |
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21567 | 5' | -54.1 | NC_004812.1 | + | 153996 | 0.7 | 0.770213 |
Target: 5'- uGGGCCGCGgcgcCAAcGUGCgcuaccGCGCGCGCa -3' miRNA: 3'- gUUCGGCGC----GUU-CAUGa-----UGUGCGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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