miRNA display CGI


Results 41 - 60 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 30630 0.72 0.710682
Target:  5'- aCGGGCCGCGCGgacgcGGgGCgcgGgACGCGCg -3'
miRNA:   3'- -GUUCGGCGCGU-----UCaUGa--UgUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 27356 0.73 0.60688
Target:  5'- --cGCCGCGCc---GCUGCugGCGCg -3'
miRNA:   3'- guuCGGCGCGuucaUGAUGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 28557 0.8 0.271933
Target:  5'- --cGCCGCGCGAGUACcGC-CGCGCc -3'
miRNA:   3'- guuCGGCGCGUUCAUGaUGuGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 136279 0.72 0.704557
Target:  5'- --cGCCuGCGCGcgcccgcgugggggcGGUGcCUGCGCGCGCg -3'
miRNA:   3'- guuCGG-CGCGU---------------UCAU-GAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 46575 0.81 0.240698
Target:  5'- --cGCCGCGCAccgcccGGggACUACACGCGCUc -3'
miRNA:   3'- guuCGGCGCGU------UCa-UGAUGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 30340 0.69 0.82514
Target:  5'- gGGGCCcgcgGCGCcGGgagGCgagGCGCGCGCg -3'
miRNA:   3'- gUUCGG----CGCGuUCa--UGa--UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 27228 0.8 0.285311
Target:  5'- -uGGCUGCGCGAGcUGCgccGCACGCGCg -3'
miRNA:   3'- guUCGGCGCGUUC-AUGa--UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 140600 0.7 0.816391
Target:  5'- aAGGCCugGCGgAGcUGCUGCugGCGCg -3'
miRNA:   3'- gUUCGG--CGCgUUcAUGAUGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 65912 0.7 0.79838
Target:  5'- gGGGCC-CGUggGUGCUGCucaaGCGCc -3'
miRNA:   3'- gUUCGGcGCGuuCAUGAUGug--CGCGa -5'
21567 5' -54.1 NC_004812.1 + 28488 0.7 0.770213
Target:  5'- uGGGCCGCGgcgcCAAcGUGCgcuaccGCGCGCGCa -3'
miRNA:   3'- gUUCGGCGC----GUU-CAUGa-----UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 65457 0.71 0.749794
Target:  5'- --uGCUGCGCGAGUGCggcuggACccccccgggccgaGCGCGCg -3'
miRNA:   3'- guuCGGCGCGUUCAUGa-----UG-------------UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 80633 0.71 0.730908
Target:  5'- uCGAGCUGCGCcgc--CUGCAgGCGCUg -3'
miRNA:   3'- -GUUCGGCGCGuucauGAUGUgCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 96872 0.71 0.720835
Target:  5'- -cGGCCGC-CAGGaGCUGgACGUGCUg -3'
miRNA:   3'- guUCGGCGcGUUCaUGAUgUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 13157 0.72 0.690178
Target:  5'- -cAGCgaCGCGCGAG-ACaACACGCGCa -3'
miRNA:   3'- guUCG--GCGCGUUCaUGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 48028 0.72 0.669472
Target:  5'- uUAGGCCGCGCugcccgaGCgggGCGCGCGCc -3'
miRNA:   3'- -GUUCGGCGCGuuca---UGa--UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 175 0.73 0.64864
Target:  5'- --cGCCGCGCGuuUAUUuucGCGCGCGCg -3'
miRNA:   3'- guuCGGCGCGUucAUGA---UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 28779 0.73 0.638199
Target:  5'- --cGCUGCGCGccuuCUGCGCGCGCg -3'
miRNA:   3'- guuCGGCGCGUucauGAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 141785 0.75 0.524749
Target:  5'- -cGGCCGCGCGGGgggGCggGC-CGCGCg -3'
miRNA:   3'- guUCGGCGCGUUCa--UGa-UGuGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 2664 0.76 0.456547
Target:  5'- gAGGCgCGCGCAGGcgGCcucgACGCGCGCg -3'
miRNA:   3'- gUUCG-GCGCGUUCa-UGa---UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 29468 0.78 0.368126
Target:  5'- gCGGGCCGCGCGGG-ACc-CGCGCGCa -3'
miRNA:   3'- -GUUCGGCGCGUUCaUGauGUGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.