miRNA display CGI


Results 61 - 80 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 96872 0.71 0.720835
Target:  5'- -cGGCCGC-CAGGaGCUGgACGUGCUg -3'
miRNA:   3'- guUCGGCGcGUUCaUGAUgUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 29297 0.71 0.740893
Target:  5'- gCGAGgCGCGCAgccGGggcccgaUGCACGCGCUc -3'
miRNA:   3'- -GUUCgGCGCGU---UCaug----AUGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 26188 0.8 0.299203
Target:  5'- gCGGGCCGCaGCGAGcgGCgGCGCGCGCg -3'
miRNA:   3'- -GUUCGGCG-CGUUCa-UGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 3926 0.77 0.402072
Target:  5'- gGGGCCGCGCGGcgGCggcacgGCGCGCGCg -3'
miRNA:   3'- gUUCGGCGCGUUcaUGa-----UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 89057 0.76 0.466009
Target:  5'- -uGGCgGCgGCGAGagcUGCUGCACGCGCg -3'
miRNA:   3'- guUCGgCG-CGUUC---AUGAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 59665 0.75 0.544967
Target:  5'- aCGGGCCgGCGCGGGcgccgcguUGCcGCGCGCGCg -3'
miRNA:   3'- -GUUCGG-CGCGUUC--------AUGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 100300 0.73 0.638199
Target:  5'- --cGCgCGCGCGcGcGCUGCGCGUGCUg -3'
miRNA:   3'- guuCG-GCGCGUuCaUGAUGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 156585 0.73 0.64864
Target:  5'- --cGCCGCGCGuuUAUUuucGCGCGCGCg -3'
miRNA:   3'- guuCGGCGCGUucAUGA---UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 30230 0.72 0.67881
Target:  5'- gGGGCgCGCGCGGGcgggGCUcgcggccgcggggACACGCGCg -3'
miRNA:   3'- gUUCG-GCGCGUUCa---UGA-------------UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 43044 0.72 0.690178
Target:  5'- gGGGCCGCagggGCAGGUugUGCugGaUGCa -3'
miRNA:   3'- gUUCGGCG----CGUUCAugAUGugC-GCGa -5'
21567 5' -54.1 NC_004812.1 + 27803 0.68 0.879389
Target:  5'- --cGCCGCGCucgccuucgACccGCGCGCGCUg -3'
miRNA:   3'- guuCGGCGCGuuca-----UGa-UGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 120778 0.68 0.87352
Target:  5'- --uGCUGCGCAAGUACcGCgacgGCGaCGCc -3'
miRNA:   3'- guuCGGCGCGUUCAUGaUG----UGC-GCGa -5'
21567 5' -54.1 NC_004812.1 + 53119 0.71 0.760555
Target:  5'- -cGGCCGuCGCGgagcGGUACUACcgcgagacgGCGCGCc -3'
miRNA:   3'- guUCGGC-GCGU----UCAUGAUG---------UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 51552 0.7 0.789135
Target:  5'- cCAGGCCGUcccgGCGAGc---GCACGCGCa -3'
miRNA:   3'- -GUUCGGCG----CGUUCaugaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 140600 0.7 0.816391
Target:  5'- aAGGCCugGCGgAGcUGCUGCugGCGCg -3'
miRNA:   3'- gUUCGG--CGCgUUcAUGAUGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 30340 0.69 0.82514
Target:  5'- gGGGCCcgcgGCGCcGGgagGCgagGCGCGCGCg -3'
miRNA:   3'- gUUCGG----CGCGuUCa--UGa--UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 73773 0.69 0.833705
Target:  5'- -cGGCgCGCGCAcccccgGGUACgcugaugACGCGCGUg -3'
miRNA:   3'- guUCG-GCGCGU------UCAUGa------UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 117293 0.69 0.84208
Target:  5'- -cGGCCGaC-CAGaUGCUGCACGUGCUa -3'
miRNA:   3'- guUCGGC-GcGUUcAUGAUGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 2287 0.68 0.865217
Target:  5'- aCGAGCgGCGCGgcgucggGGUccgGCUcgagcaggGCGCGCGCg -3'
miRNA:   3'- -GUUCGgCGCGU-------UCA---UGA--------UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 87160 0.68 0.865983
Target:  5'- -cGGCCGCGCGacagaGGaUGCgcCGCGUGCg -3'
miRNA:   3'- guUCGGCGCGU-----UC-AUGauGUGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.