miRNA display CGI


Results 81 - 100 of 297 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 14367 0.7 0.770213
Target:  5'- -cGGCCGCGCGGGcGCgGCG-GCGCa -3'
miRNA:   3'- guUCGGCGCGUUCaUGaUGUgCGCGa -5'
21567 5' -54.1 NC_004812.1 + 141987 0.7 0.811058
Target:  5'- gAGGCCGCGCGGGUGCcccggcugcagugguUccgggacgugGC-CGCGCUg -3'
miRNA:   3'- gUUCGGCGCGUUCAUG---------------A----------UGuGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 94037 0.7 0.816391
Target:  5'- -cGGCgUGUGCcccGUGCUGCGCGUGCUc -3'
miRNA:   3'- guUCG-GCGCGuu-CAUGAUGUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 58127 0.69 0.833705
Target:  5'- --cGCCGCcccacccaCGAcccuGUACUACACGCGCa -3'
miRNA:   3'- guuCGGCGc-------GUU----CAUGAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 110016 0.69 0.833705
Target:  5'- --cGUCGCGCcgcuccuGUGCUACccggccGCGCGCUa -3'
miRNA:   3'- guuCGGCGCGuu-----CAUGAUG------UGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 2287 0.68 0.865217
Target:  5'- aCGAGCgGCGCGgcgucggGGUccgGCUcgagcaggGCGCGCGCg -3'
miRNA:   3'- -GUUCGgCGCGU-------UCA---UGA--------UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 87160 0.68 0.865983
Target:  5'- -cGGCCGCGCGacagaGGaUGCgcCGCGUGCg -3'
miRNA:   3'- guUCGGCGCGU-----UC-AUGauGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 43044 0.72 0.690178
Target:  5'- gGGGCCGCagggGCAGGUugUGCugGaUGCa -3'
miRNA:   3'- gUUCGGCG----CGUUCAugAUGugC-GCGa -5'
21567 5' -54.1 NC_004812.1 + 30230 0.72 0.67881
Target:  5'- gGGGCgCGCGCGGGcgggGCUcgcggccgcggggACACGCGCg -3'
miRNA:   3'- gUUCG-GCGCGUUCa---UGA-------------UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 156585 0.73 0.64864
Target:  5'- --cGCCGCGCGuuUAUUuucGCGCGCGCg -3'
miRNA:   3'- guuCGGCGCGUucAUGA---UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 30948 0.68 0.880833
Target:  5'- gCGGGCCGCGgGcgcggcggcgcGGcGCcACGCGCGCg -3'
miRNA:   3'- -GUUCGGCGCgU-----------UCaUGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 80657 0.68 0.887915
Target:  5'- -uGGCCGCGCAgaacaAGUACaACcCGCGg- -3'
miRNA:   3'- guUCGGCGCGU-----UCAUGaUGuGCGCga -5'
21567 5' -54.1 NC_004812.1 + 47326 0.68 0.894762
Target:  5'- -cGGgCGCGCAGGUAggccuCUGCGguCGCGCc -3'
miRNA:   3'- guUCgGCGCGUUCAU-----GAUGU--GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 30530 0.68 0.901371
Target:  5'- gGGGCCGCGCcgcGGgacggGCggGCGuCGCGCg -3'
miRNA:   3'- gUUCGGCGCGu--UCa----UGa-UGU-GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 6048 0.68 0.901371
Target:  5'- --cGCCGCGCGGcUAUcgACAcCGCGCa -3'
miRNA:   3'- guuCGGCGCGUUcAUGa-UGU-GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 26188 0.8 0.299203
Target:  5'- gCGGGCCGCaGCGAGcgGCgGCGCGCGCg -3'
miRNA:   3'- -GUUCGGCG-CGUUCa-UGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 3926 0.77 0.402072
Target:  5'- gGGGCCGCGCGGcgGCggcacgGCGCGCGCg -3'
miRNA:   3'- gUUCGGCGCGUUcaUGa-----UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 89057 0.76 0.466009
Target:  5'- -uGGCgGCgGCGAGagcUGCUGCACGCGCg -3'
miRNA:   3'- guUCGgCG-CGUUC---AUGAUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 59665 0.75 0.544967
Target:  5'- aCGGGCCgGCGCGGGcgccgcguUGCcGCGCGCGCg -3'
miRNA:   3'- -GUUCGG-CGCGUUC--------AUGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 100300 0.73 0.638199
Target:  5'- --cGCgCGCGCGcGcGCUGCGCGUGCUg -3'
miRNA:   3'- guuCG-GCGCGUuCaUGAUGUGCGCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.