miRNA display CGI


Results 21 - 40 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 41902 0.66 0.953501
Target:  5'- aCGAcGCCGUGCAuccGUACUcccccgcggccccGgGCGCGCc -3'
miRNA:   3'- -GUU-CGGCGCGUu--CAUGA-------------UgUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 55492 0.66 0.951445
Target:  5'- cCGAGCUGCGCGccaugcucgaccgcgAGUGCcGCGuggcCGUGCg -3'
miRNA:   3'- -GUUCGGCGCGU---------------UCAUGaUGU----GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 71901 0.66 0.949758
Target:  5'- gCGGGCCGgGCGgcgcGGcGCcGCGgGCGCUg -3'
miRNA:   3'- -GUUCGGCgCGU----UCaUGaUGUgCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 131762 0.66 0.949758
Target:  5'- -cAGCCGCGCcgcccGCgGCGCGUGCc -3'
miRNA:   3'- guUCGGCGCGuuca-UGaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 21019 0.66 0.949758
Target:  5'- -cGGCCGCGgGGGUGCauggggugGC-UGCGCg -3'
miRNA:   3'- guUCGGCGCgUUCAUGa-------UGuGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 27256 0.66 0.949758
Target:  5'- ----aCGCGCuGGUGCU-CAUGCGCc -3'
miRNA:   3'- guucgGCGCGuUCAUGAuGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 124059 0.66 0.949758
Target:  5'- gGGGCCGCgGCcAGcUGCgccCGCGUGCUc -3'
miRNA:   3'- gUUCGGCG-CGuUC-AUGau-GUGCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 144242 0.66 0.949758
Target:  5'- -cGGCCGCGCG---GCcGgGCGCGCc -3'
miRNA:   3'- guUCGGCGCGUucaUGaUgUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 152764 0.66 0.949758
Target:  5'- ----aCGCGCuGGUGCU-CAUGCGCc -3'
miRNA:   3'- guucgGCGCGuUCAUGAuGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 22903 0.66 0.949758
Target:  5'- cCGAGgUGCGCGGGgGCgugGC-CGCGCc -3'
miRNA:   3'- -GUUCgGCGCGUUCaUGa--UGuGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 26813 0.66 0.94933
Target:  5'- --uGCgGCGCGcGUACgcgccccUGCugGCGCg -3'
miRNA:   3'- guuCGgCGCGUuCAUG-------AUGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 152321 0.66 0.94933
Target:  5'- --uGCgGCGCGcGUACgcgccccUGCugGCGCg -3'
miRNA:   3'- guuCGgCGCGUuCAUG-------AUGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 35620 0.66 0.945369
Target:  5'- cCGGGCCGaaCGCGGgggaggguugacGUGCcgcggGCGCGCGCg -3'
miRNA:   3'- -GUUCGGC--GCGUU------------CAUGa----UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 60852 0.66 0.945369
Target:  5'- aGAGgCGCGuCAGGUuCgggGCGCGCgGCUg -3'
miRNA:   3'- gUUCgGCGC-GUUCAuGa--UGUGCG-CGA- -5'
21567 5' -54.1 NC_004812.1 + 140648 0.66 0.945369
Target:  5'- --cGCCGCGCGGcgGCgccaACGCGCc -3'
miRNA:   3'- guuCGGCGCGUUcaUGaug-UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 89830 0.66 0.945369
Target:  5'- -uGGCUggagGCGCGGGUGC-AgGCGUGCg -3'
miRNA:   3'- guUCGG----CGCGUUCAUGaUgUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 31610 0.66 0.945369
Target:  5'- --cGCCGCGCAGGg---GCGCcuccaGCGCc -3'
miRNA:   3'- guuCGGCGCGUUCaugaUGUG-----CGCGa -5'
21567 5' -54.1 NC_004812.1 + 49575 0.66 0.945369
Target:  5'- aCGAGCaGgGCcuGggGCUGCugGCGCa -3'
miRNA:   3'- -GUUCGgCgCGuuCa-UGAUGugCGCGa -5'
21567 5' -54.1 NC_004812.1 + 133408 0.66 0.945369
Target:  5'- uGGGCgGCG-AAGUACgucagACACGCGa- -3'
miRNA:   3'- gUUCGgCGCgUUCAUGa----UGUGCGCga -5'
21567 5' -54.1 NC_004812.1 + 27459 0.66 0.944917
Target:  5'- gAGGCCGCGCAcGUuCaGCGCcgccccgGCGCg -3'
miRNA:   3'- gUUCGGCGCGUuCAuGaUGUG-------CGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.