miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21572 3' -55.7 NC_004812.1 + 27913 0.66 0.943462
Target:  5'- gGUCGGGGagacCGggcgccccgCCUcCCGGAGACcgCCGg -3'
miRNA:   3'- -CAGCUCCa---GCa--------GGA-GGCCUUUGa-GGC- -5'
21572 3' -55.7 NC_004812.1 + 32019 0.66 0.943462
Target:  5'- -cCGAaccGGcCGcCCcCCGGggGCUCCa -3'
miRNA:   3'- caGCU---CCaGCaGGaGGCCuuUGAGGc -5'
21572 3' -55.7 NC_004812.1 + 20917 0.66 0.943462
Target:  5'- cGUCGcguaguGGUCGUacagCCUCCGGAAGa--CGg -3'
miRNA:   3'- -CAGCu-----CCAGCA----GGAGGCCUUUgagGC- -5'
21572 3' -55.7 NC_004812.1 + 155040 0.66 0.938887
Target:  5'- --aGAGGgc-UCUUCCGGGAAC-CCGg -3'
miRNA:   3'- cagCUCCagcAGGAGGCCUUUGaGGC- -5'
21572 3' -55.7 NC_004812.1 + 14324 0.66 0.938887
Target:  5'- -cCGGGGcCcUCgUCCaGGAGCUCCGg -3'
miRNA:   3'- caGCUCCaGcAGgAGGcCUUUGAGGC- -5'
21572 3' -55.7 NC_004812.1 + 124139 0.66 0.938887
Target:  5'- --aGAGGgc-UCUUCCGGGAAC-CCGg -3'
miRNA:   3'- cagCUCCagcAGGAGGCCUUUGaGGC- -5'
21572 3' -55.7 NC_004812.1 + 130663 0.66 0.934081
Target:  5'- cGUCGGcccgcGGUCcgggcccgaGUCCUCCGacuccGACUCCGa -3'
miRNA:   3'- -CAGCU-----CCAG---------CAGGAGGCcu---UUGAGGC- -5'
21572 3' -55.7 NC_004812.1 + 72497 0.66 0.934081
Target:  5'- cUCGGGGUCGgggggcgcgCCgccgCCGGGG--UCCGg -3'
miRNA:   3'- cAGCUCCAGCa--------GGa---GGCCUUugAGGC- -5'
21572 3' -55.7 NC_004812.1 + 11988 0.66 0.934081
Target:  5'- -gCGGGGU--UCCgCCGGcGGGCUCCGg -3'
miRNA:   3'- caGCUCCAgcAGGaGGCC-UUUGAGGC- -5'
21572 3' -55.7 NC_004812.1 + 5154 0.66 0.934081
Target:  5'- cGUCGGcccgcGGUCcgggcccgaGUCCUCCGacuccGACUCCGa -3'
miRNA:   3'- -CAGCU-----CCAG---------CAGGAGGCcu---UUGAGGC- -5'
21572 3' -55.7 NC_004812.1 + 7898 0.66 0.929042
Target:  5'- cUCGAgGGUCGcCCgcaggugUCGGggGCUgCGg -3'
miRNA:   3'- cAGCU-CCAGCaGGa------GGCCuuUGAgGC- -5'
21572 3' -55.7 NC_004812.1 + 38799 0.66 0.929042
Target:  5'- cUCGAgGGUCGcCCgcaggugUCGGggGCUgCGg -3'
miRNA:   3'- cAGCU-CCAGCaGGa------GGCCuuUGAgGC- -5'
21572 3' -55.7 NC_004812.1 + 127439 0.66 0.929042
Target:  5'- -aUGAGGaUCaUCUUCUGGAAggGCUCCa -3'
miRNA:   3'- caGCUCC-AGcAGGAGGCCUU--UGAGGc -5'
21572 3' -55.7 NC_004812.1 + 67239 0.66 0.929042
Target:  5'- cUCGAGGgag-CCgCCGGGGACUgCGg -3'
miRNA:   3'- cAGCUCCagcaGGaGGCCUUUGAgGC- -5'
21572 3' -55.7 NC_004812.1 + 25395 0.66 0.92377
Target:  5'- --gGAGGUCGgcgcgCUcgCCGGAGACcgCCGc -3'
miRNA:   3'- cagCUCCAGCa----GGa-GGCCUUUGa-GGC- -5'
21572 3' -55.7 NC_004812.1 + 107883 0.66 0.92377
Target:  5'- --gGGcGGUCGUCCUCCGGG----CCGc -3'
miRNA:   3'- cagCU-CCAGCAGGAGGCCUuugaGGC- -5'
21572 3' -55.7 NC_004812.1 + 127520 0.66 0.92377
Target:  5'- -gCGGGGccggCGUCCUCgGcGAGGCUCg- -3'
miRNA:   3'- caGCUCCa---GCAGGAGgC-CUUUGAGgc -5'
21572 3' -55.7 NC_004812.1 + 101411 0.66 0.92377
Target:  5'- --gGGGGUCGUCCgcagCUGGcggucgguGAGCUCgCGg -3'
miRNA:   3'- cagCUCCAGCAGGa---GGCC--------UUUGAG-GC- -5'
21572 3' -55.7 NC_004812.1 + 150903 0.66 0.92377
Target:  5'- --gGAGGUCGgcgcgCUcgCCGGAGACcgCCGc -3'
miRNA:   3'- cagCUCCAGCa----GGa-GGCCUUUGa-GGC- -5'
21572 3' -55.7 NC_004812.1 + 126627 0.66 0.918266
Target:  5'- aUCGAGGgcgaCGgcagCCUCCGGcAGCUgCUGu -3'
miRNA:   3'- cAGCUCCa---GCa---GGAGGCCuUUGA-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.