miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21572 3' -55.7 NC_004812.1 + 140510 0.66 0.918266
Target:  5'- cUCGAcGGUCGUgC-CCG-AGACUCCa -3'
miRNA:   3'- cAGCU-CCAGCAgGaGGCcUUUGAGGc -5'
21572 3' -55.7 NC_004812.1 + 30295 0.66 0.918266
Target:  5'- -cCGAGGg-GUCC-CUGGGGAcCUCCGc -3'
miRNA:   3'- caGCUCCagCAGGaGGCCUUU-GAGGC- -5'
21572 3' -55.7 NC_004812.1 + 89670 0.67 0.91253
Target:  5'- aUCGAGGUCGaCCcCCGGG---UCCu -3'
miRNA:   3'- cAGCUCCAGCaGGaGGCCUuugAGGc -5'
21572 3' -55.7 NC_004812.1 + 35008 0.67 0.906562
Target:  5'- cGUUGAGGUCGgcgagCUCggCGGggGC-CCGg -3'
miRNA:   3'- -CAGCUCCAGCag---GAG--GCCuuUGaGGC- -5'
21572 3' -55.7 NC_004812.1 + 92497 0.67 0.906562
Target:  5'- cGUCGAGGcggCGgcccggCUUCCGGGG--UCCGg -3'
miRNA:   3'- -CAGCUCCa--GCa-----GGAGGCCUUugAGGC- -5'
21572 3' -55.7 NC_004812.1 + 54522 0.67 0.900366
Target:  5'- cGUCGGauaccugcGGUcCGUCUUCgGGGgcggcGACUCCGa -3'
miRNA:   3'- -CAGCU--------CCA-GCAGGAGgCCU-----UUGAGGC- -5'
21572 3' -55.7 NC_004812.1 + 98292 0.67 0.900366
Target:  5'- -aCGuGcUCGUCgUCCGG-GGCUCCGg -3'
miRNA:   3'- caGCuCcAGCAGgAGGCCuUUGAGGC- -5'
21572 3' -55.7 NC_004812.1 + 134262 0.67 0.900366
Target:  5'- -cUGGGGUCGUCUUCCccgagucuagGGGAACcaggUCCa -3'
miRNA:   3'- caGCUCCAGCAGGAGG----------CCUUUG----AGGc -5'
21572 3' -55.7 NC_004812.1 + 7608 0.67 0.893944
Target:  5'- -cCGGGGUCGgaggUCgcgCCGGAGACgcgcggcggCCGg -3'
miRNA:   3'- caGCUCCAGCa---GGa--GGCCUUUGa--------GGC- -5'
21572 3' -55.7 NC_004812.1 + 38839 0.67 0.893944
Target:  5'- gGUUGAGGUCcagcugGUCCUCCuGcAugUCCa -3'
miRNA:   3'- -CAGCUCCAG------CAGGAGGcCuUugAGGc -5'
21572 3' -55.7 NC_004812.1 + 38509 0.67 0.893944
Target:  5'- -cCGGGGUCGgaggUCgcgCCGGAGACgcgcggcggCCGg -3'
miRNA:   3'- caGCUCCAGCa---GGa--GGCCUUUGa--------GGC- -5'
21572 3' -55.7 NC_004812.1 + 8278 0.67 0.893289
Target:  5'- -cCGAGauaccaggcccacGUCGaUCUgcgCCGGGAGCUCCGc -3'
miRNA:   3'- caGCUC-------------CAGC-AGGa--GGCCUUUGAGGC- -5'
21572 3' -55.7 NC_004812.1 + 144683 0.67 0.887298
Target:  5'- -gCGGGGccgUCGUCgUCCGGcAGACcCCGu -3'
miRNA:   3'- caGCUCC---AGCAGgAGGCC-UUUGaGGC- -5'
21572 3' -55.7 NC_004812.1 + 57651 0.67 0.887298
Target:  5'- cGUCGccaaacAGGUCGUCCgcggccCCGGGucucUUCCGg -3'
miRNA:   3'- -CAGC------UCCAGCAGGa-----GGCCUuu--GAGGC- -5'
21572 3' -55.7 NC_004812.1 + 22563 0.68 0.880433
Target:  5'- cUCGAGGUCGgCCUC-GGu--UUCCGg -3'
miRNA:   3'- cAGCUCCAGCaGGAGgCCuuuGAGGC- -5'
21572 3' -55.7 NC_004812.1 + 98015 0.68 0.880433
Target:  5'- cUCGAGGUCcggGUCCgguuccgguUCCGGGucgGGCUCgGg -3'
miRNA:   3'- cAGCUCCAG---CAGG---------AGGCCU---UUGAGgC- -5'
21572 3' -55.7 NC_004812.1 + 99245 0.68 0.873353
Target:  5'- -gCGGGGgcCGUCCgggCCGGAGGCacgcaCCGg -3'
miRNA:   3'- caGCUCCa-GCAGGa--GGCCUUUGa----GGC- -5'
21572 3' -55.7 NC_004812.1 + 22515 0.68 0.873353
Target:  5'- cUCGAGGUCGgCCUCUGacacAGACUCg- -3'
miRNA:   3'- cAGCUCCAGCaGGAGGCc---UUUGAGgc -5'
21572 3' -55.7 NC_004812.1 + 32421 0.68 0.866062
Target:  5'- -aCGGGGcCGUCC-CCGGgcGC-CCGc -3'
miRNA:   3'- caGCUCCaGCAGGaGGCCuuUGaGGC- -5'
21572 3' -55.7 NC_004812.1 + 1520 0.68 0.866062
Target:  5'- -aCGGGGcCGUCC-CCGGgcGC-CCGc -3'
miRNA:   3'- caGCUCCaGCAGGaGGCCuuUGaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.