Results 1 - 20 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21572 | 5' | -58 | NC_004812.1 | + | 131188 | 0.66 | 0.850871 |
Target: 5'- cCCCGGGaCCCCCcuGCGguUCUacgaggUGAAGUg -3' miRNA: 3'- cGGGCUC-GGGGGu-CGC--AGA------ACUUCAg -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 106703 | 0.66 | 0.850871 |
Target: 5'- gGCgUCGGGCCCCgGGgGgccCUcGggGUCg -3' miRNA: 3'- -CG-GGCUCGGGGgUCgCa--GAaCuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 67416 | 0.66 | 0.850871 |
Target: 5'- gGCCCcGGCUCCCAGaCGgcg-GggGUg -3' miRNA: 3'- -CGGGcUCGGGGGUC-GCagaaCuuCAg -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 83220 | 0.66 | 0.850871 |
Target: 5'- gGCgCCGGGCUggCCCAGCGggaUGggGg- -3' miRNA: 3'- -CG-GGCUCGG--GGGUCGCagaACuuCag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 1410 | 0.66 | 0.842983 |
Target: 5'- gGCCCG-GCCCCgaCGGCGgccgCggGGAGg- -3' miRNA: 3'- -CGGGCuCGGGG--GUCGCa---GaaCUUCag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 31359 | 0.66 | 0.842983 |
Target: 5'- aGCCCGGGCCgCCGGCGcgCcUGc-GUg -3' miRNA: 3'- -CGGGCUCGGgGGUCGCa-GaACuuCAg -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 126918 | 0.66 | 0.842983 |
Target: 5'- gGCCCG-GCCCCgaCGGCGgccgCggGGAGg- -3' miRNA: 3'- -CGGGCuCGGGG--GUCGCa---GaaCUUCag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 458 | 0.66 | 0.842983 |
Target: 5'- aGCCCGGGCCgCCGGCGcgCcUGc-GUg -3' miRNA: 3'- -CGGGCUCGGgGGUCGCa-GaACuuCAg -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 45032 | 0.66 | 0.834908 |
Target: 5'- cGCCgaGAGCUCCCGGaaggaGaUCcUGggGUCc -3' miRNA: 3'- -CGGg-CUCGGGGGUCg----C-AGaACuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 46462 | 0.66 | 0.834908 |
Target: 5'- gGCCaGGGCCUCC-GCGUCcggGucGUCg -3' miRNA: 3'- -CGGgCUCGGGGGuCGCAGaa-CuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 73432 | 0.66 | 0.83245 |
Target: 5'- cGCCgCGAGCUCCggggccgcgcgccaCGGCGcCagGggGUCg -3' miRNA: 3'- -CGG-GCUCGGGG--------------GUCGCaGaaCuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 43994 | 0.66 | 0.830803 |
Target: 5'- cGCCCGAccggccgGCCUCCucggagccgggGGCGUCguccgcguccucGAAGUCg -3' miRNA: 3'- -CGGGCU-------CGGGGG-----------UCGCAGaa----------CUUCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 117630 | 0.66 | 0.826654 |
Target: 5'- gGCgCGGGCCgCCgGGCG-CggcGggGUCg -3' miRNA: 3'- -CGgGCUCGG-GGgUCGCaGaa-CuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 126082 | 0.66 | 0.826654 |
Target: 5'- cGCCCGucccgcggcgcGGCCCCCGGCcccg-GgcGUCc -3' miRNA: 3'- -CGGGC-----------UCGGGGGUCGcagaaCuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 14219 | 0.66 | 0.826654 |
Target: 5'- gGCCCc-GCCCCCGGCGgccacggcgCgccgggUGAuGUCg -3' miRNA: 3'- -CGGGcuCGGGGGUCGCa--------Ga-----ACUuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 4698 | 0.66 | 0.826654 |
Target: 5'- cGCCCcaGAGCCCCgGGCGgcu----GUCg -3' miRNA: 3'- -CGGG--CUCGGGGgUCGCagaacuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 574 | 0.66 | 0.826654 |
Target: 5'- cGCCCGucccgcggcgcGGCCCCCGGCcccg-GgcGUCc -3' miRNA: 3'- -CGGGC-----------UCGGGGGUCGcagaaCuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 148531 | 0.66 | 0.826654 |
Target: 5'- gGCgCGGGCCgCCgGGCG-CggcGggGUCg -3' miRNA: 3'- -CGgGCUCGG-GGgUCGCaGaa-CuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 130206 | 0.66 | 0.826654 |
Target: 5'- cGCCCcaGAGCCCCgGGCGgcu----GUCg -3' miRNA: 3'- -CGGG--CUCGGGGgUCGCagaacuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 24042 | 0.66 | 0.826654 |
Target: 5'- cGCCCGcauccagcaccGCCCCCGGCcgGUCgaGGAGcCc -3' miRNA: 3'- -CGGGCu----------CGGGGGUCG--CAGaaCUUCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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