miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21572 5' -58 NC_004812.1 + 143231 0.66 0.818227
Target:  5'- cCCCGA-CCCCCGGCGcg--GAAGg- -3'
miRNA:   3'- cGGGCUcGGGGGUCGCagaaCUUCag -5'
21572 5' -58 NC_004812.1 + 131188 0.66 0.850871
Target:  5'- cCCCGGGaCCCCCcuGCGguUCUacgaggUGAAGUg -3'
miRNA:   3'- cGGGCUC-GGGGGu-CGC--AGA------ACUUCAg -5'
21572 5' -58 NC_004812.1 + 83220 0.66 0.850871
Target:  5'- gGCgCCGGGCUggCCCAGCGggaUGggGg- -3'
miRNA:   3'- -CG-GGCUCGG--GGGUCGCagaACuuCag -5'
21572 5' -58 NC_004812.1 + 24042 0.66 0.826654
Target:  5'- cGCCCGcauccagcaccGCCCCCGGCcgGUCgaGGAGcCc -3'
miRNA:   3'- -CGGGCu----------CGGGGGUCG--CAGaaCUUCaG- -5'
21572 5' -58 NC_004812.1 + 67416 0.66 0.850871
Target:  5'- gGCCCcGGCUCCCAGaCGgcg-GggGUg -3'
miRNA:   3'- -CGGGcUCGGGGGUC-GCagaaCuuCAg -5'
21572 5' -58 NC_004812.1 + 35745 0.66 0.809635
Target:  5'- cCCCGcuacagcgccAGCCCCCgcaggggggaGGCGUCguagaUGAGGUa -3'
miRNA:   3'- cGGGC----------UCGGGGG----------UCGCAGa----ACUUCAg -5'
21572 5' -58 NC_004812.1 + 73432 0.66 0.83245
Target:  5'- cGCCgCGAGCUCCggggccgcgcgccaCGGCGcCagGggGUCg -3'
miRNA:   3'- -CGG-GCUCGGGG--------------GUCGCaGaaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 126918 0.66 0.842983
Target:  5'- gGCCCG-GCCCCgaCGGCGgccgCggGGAGg- -3'
miRNA:   3'- -CGGGCuCGGGG--GUCGCa---GaaCUUCag -5'
21572 5' -58 NC_004812.1 + 117630 0.66 0.826654
Target:  5'- gGCgCGGGCCgCCgGGCG-CggcGggGUCg -3'
miRNA:   3'- -CGgGCUCGG-GGgUCGCaGaa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 136948 0.66 0.818227
Target:  5'- cCCCGcGGCCCCCGGCGgUCUc------ -3'
miRNA:   3'- cGGGC-UCGGGGGUCGC-AGAacuucag -5'
21572 5' -58 NC_004812.1 + 126082 0.66 0.826654
Target:  5'- cGCCCGucccgcggcgcGGCCCCCGGCcccg-GgcGUCc -3'
miRNA:   3'- -CGGGC-----------UCGGGGGUCGcagaaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 130206 0.66 0.826654
Target:  5'- cGCCCcaGAGCCCCgGGCGgcu----GUCg -3'
miRNA:   3'- -CGGG--CUCGGGGgUCGCagaacuuCAG- -5'
21572 5' -58 NC_004812.1 + 106578 0.66 0.809635
Target:  5'- cGCCCGGGCCgggcgcagaCGGCGcgaUGGAGUCu -3'
miRNA:   3'- -CGGGCUCGGgg-------GUCGCagaACUUCAG- -5'
21572 5' -58 NC_004812.1 + 458 0.66 0.842983
Target:  5'- aGCCCGGGCCgCCGGCGcgCcUGc-GUg -3'
miRNA:   3'- -CGGGCUCGGgGGUCGCa-GaACuuCAg -5'
21572 5' -58 NC_004812.1 + 45032 0.66 0.834908
Target:  5'- cGCCgaGAGCUCCCGGaaggaGaUCcUGggGUCc -3'
miRNA:   3'- -CGGg-CUCGGGGGUCg----C-AGaACuuCAG- -5'
21572 5' -58 NC_004812.1 + 22366 0.66 0.825819
Target:  5'- gGCCUGAcgcggcaaagcgcGCCgCCAGCGUCU--GGGUa -3'
miRNA:   3'- -CGGGCU-------------CGGgGGUCGCAGAacUUCAg -5'
21572 5' -58 NC_004812.1 + 538 0.66 0.815666
Target:  5'- cGCCCGGGCccucccgccucccgCCCCGGCGcgCgcggccgcgUGGAGcCg -3'
miRNA:   3'- -CGGGCUCG--------------GGGGUCGCa-Ga--------ACUUCaG- -5'
21572 5' -58 NC_004812.1 + 14219 0.66 0.826654
Target:  5'- gGCCCc-GCCCCCGGCGgccacggcgCgccgggUGAuGUCg -3'
miRNA:   3'- -CGGGcuCGGGGGUCGCa--------Ga-----ACUuCAG- -5'
21572 5' -58 NC_004812.1 + 105241 0.66 0.809635
Target:  5'- aCCCGGgcgggcgacGCgUCCGGUGUUaUGAAGUCa -3'
miRNA:   3'- cGGGCU---------CGgGGGUCGCAGaACUUCAG- -5'
21572 5' -58 NC_004812.1 + 111362 0.66 0.817375
Target:  5'- cCCCGAGaCCCCAccgcgcuGUGUCgcggUGAcGUCa -3'
miRNA:   3'- cGGGCUCgGGGGU-------CGCAGa---ACUuCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.