miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21572 5' -58 NC_004812.1 + 105241 0.66 0.809635
Target:  5'- aCCCGGgcgggcgacGCgUCCGGUGUUaUGAAGUCa -3'
miRNA:   3'- cGGGCU---------CGgGGGUCGCAGaACUUCAG- -5'
21572 5' -58 NC_004812.1 + 1410 0.66 0.842983
Target:  5'- gGCCCG-GCCCCgaCGGCGgccgCggGGAGg- -3'
miRNA:   3'- -CGGGCuCGGGG--GUCGCa---GaaCUUCag -5'
21572 5' -58 NC_004812.1 + 46462 0.66 0.834908
Target:  5'- gGCCaGGGCCUCC-GCGUCcggGucGUCg -3'
miRNA:   3'- -CGGgCUCGGGGGuCGCAGaa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 106703 0.66 0.850871
Target:  5'- gGCgUCGGGCCCCgGGgGgccCUcGggGUCg -3'
miRNA:   3'- -CG-GGCUCGGGGgUCgCa--GAaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 31439 0.66 0.815666
Target:  5'- cGCCCGGGCccucccgccucccgCCCCGGCGcgCgcggccgcgUGGAGcCg -3'
miRNA:   3'- -CGGGCUCG--------------GGGGUCGCa-Ga--------ACUUCaG- -5'
21572 5' -58 NC_004812.1 + 71235 0.66 0.818227
Target:  5'- cGCCCGaAGCacagCUCGGCGUCc--AGGUCg -3'
miRNA:   3'- -CGGGC-UCGg---GGGUCGCAGaacUUCAG- -5'
21572 5' -58 NC_004812.1 + 4698 0.66 0.826654
Target:  5'- cGCCCcaGAGCCCCgGGCGgcu----GUCg -3'
miRNA:   3'- -CGGG--CUCGGGGgUCGCagaacuuCAG- -5'
21572 5' -58 NC_004812.1 + 31359 0.66 0.842983
Target:  5'- aGCCCGGGCCgCCGGCGcgCcUGc-GUg -3'
miRNA:   3'- -CGGGCUCGGgGGUCGCa-GaACuuCAg -5'
21572 5' -58 NC_004812.1 + 106578 0.66 0.809635
Target:  5'- cGCCCGGGCCgggcgcagaCGGCGcgaUGGAGUCu -3'
miRNA:   3'- -CGGGCUCGGgg-------GUCGCagaACUUCAG- -5'
21572 5' -58 NC_004812.1 + 111362 0.66 0.817375
Target:  5'- cCCCGAGaCCCCAccgcgcuGUGUCgcggUGAcGUCa -3'
miRNA:   3'- cGGGCUCgGGGGU-------CGCAGa---ACUuCAG- -5'
21572 5' -58 NC_004812.1 + 138086 0.66 0.809635
Target:  5'- aGCgCGAGCgaagCCCUGGCGggaUGggGUCu -3'
miRNA:   3'- -CGgGCUCG----GGGGUCGCagaACuuCAG- -5'
21572 5' -58 NC_004812.1 + 538 0.66 0.815666
Target:  5'- cGCCCGGGCccucccgccucccgCCCCGGCGcgCgcggccgcgUGGAGcCg -3'
miRNA:   3'- -CGGGCUCG--------------GGGGUCGCa-Ga--------ACUUCaG- -5'
21572 5' -58 NC_004812.1 + 35745 0.66 0.809635
Target:  5'- cCCCGcuacagcgccAGCCCCCgcaggggggaGGCGUCguagaUGAGGUa -3'
miRNA:   3'- cGGGC----------UCGGGGG----------UCGCAGa----ACUUCAg -5'
21572 5' -58 NC_004812.1 + 143264 0.66 0.818227
Target:  5'- cCCCGA-CCCCCGGCGcg--GAAGg- -3'
miRNA:   3'- cGGGCUcGGGGGUCGCagaaCUUCag -5'
21572 5' -58 NC_004812.1 + 143231 0.66 0.818227
Target:  5'- cCCCGA-CCCCCGGCGcg--GAAGg- -3'
miRNA:   3'- cGGGCUcGGGGGUCGCagaaCUUCag -5'
21572 5' -58 NC_004812.1 + 136948 0.66 0.818227
Target:  5'- cCCCGcGGCCCCCGGCGgUCUc------ -3'
miRNA:   3'- cGGGC-UCGGGGGUCGC-AGAacuucag -5'
21572 5' -58 NC_004812.1 + 42941 0.67 0.755083
Target:  5'- aGCgCGAGCaCgCCGcGgGUCUUGAGGUa -3'
miRNA:   3'- -CGgGCUCG-GgGGU-CgCAGAACUUCAg -5'
21572 5' -58 NC_004812.1 + 71305 0.67 0.755083
Target:  5'- uGCCCGGGCUUCCGGUGUgCgcggcuucgUGggGcCc -3'
miRNA:   3'- -CGGGCUCGGGGGUCGCA-Ga--------ACuuCaG- -5'
21572 5' -58 NC_004812.1 + 99253 0.67 0.800887
Target:  5'- cGUCCGGGCCggaggcacgcaCCGGCGgcccgUGggGUCc -3'
miRNA:   3'- -CGGGCUCGGg----------GGUCGCaga--ACuuCAG- -5'
21572 5' -58 NC_004812.1 + 139859 0.67 0.755083
Target:  5'- gGCCCGcGGCCCCCggGGCGcCcUGc-GUCg -3'
miRNA:   3'- -CGGGC-UCGGGGG--UCGCaGaACuuCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.