Results 41 - 60 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21572 | 5' | -58 | NC_004812.1 | + | 4457 | 0.67 | 0.804405 |
Target: 5'- cGCCCGAGUaCCCCGGCGaccccgcccacggccUCUggaUGAccccGGUg -3' miRNA: 3'- -CGGGCUCG-GGGGUCGC---------------AGA---ACU----UCAg -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 3812 | 0.67 | 0.76449 |
Target: 5'- gGCCuCGGcGCCgCCGGCGaCgcgGAGGUCc -3' miRNA: 3'- -CGG-GCU-CGGgGGUCGCaGaa-CUUCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 58618 | 0.67 | 0.76449 |
Target: 5'- aGCCCGAGCCCCCGuGCcUCccGGc--- -3' miRNA: 3'- -CGGGCUCGGGGGU-CGcAGaaCUucag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 111437 | 0.67 | 0.79199 |
Target: 5'- gGCuCCG-GCCCCCGG-GUCaUGAucGUCc -3' miRNA: 3'- -CG-GGCuCGGGGGUCgCAGaACUu-CAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 120660 | 0.67 | 0.782952 |
Target: 5'- cGCCCGGGCCCCCGugaccGCGgcgCUg------ -3' miRNA: 3'- -CGGGCUCGGGGGU-----CGCa--GAacuucag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 71305 | 0.67 | 0.755083 |
Target: 5'- uGCCCGGGCUUCCGGUGUgCgcggcuucgUGggGcCc -3' miRNA: 3'- -CGGGCUCGGGGGUCGCA-Ga--------ACuuCaG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 42941 | 0.67 | 0.755083 |
Target: 5'- aGCgCGAGCaCgCCGcGgGUCUUGAGGUa -3' miRNA: 3'- -CGgGCUCG-GgGGU-CgCAGAACUUCAg -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 145021 | 0.67 | 0.773783 |
Target: 5'- cGCCCGccguGUCCCCGGCGagCgcgGAGG-Cg -3' miRNA: 3'- -CGGGCu---CGGGGGUCGCa-Gaa-CUUCaG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 72480 | 0.67 | 0.800887 |
Target: 5'- cGCCCGA--CUCCGGUGUCU--AAGUCc -3' miRNA: 3'- -CGGGCUcgGGGGUCGCAGAacUUCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 129748 | 0.67 | 0.773783 |
Target: 5'- aGCCUGGGCgUCCCGGUGUCccgguuuccGggGUUc -3' miRNA: 3'- -CGGGCUCG-GGGGUCGCAGaa-------CuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 54733 | 0.67 | 0.773783 |
Target: 5'- aGCCCGGcgcGCCCCCGGgGguaCcUGggGg- -3' miRNA: 3'- -CGGGCU---CGGGGGUCgCa--GaACuuCag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 20171 | 0.67 | 0.777466 |
Target: 5'- cGCUCGGGCCCCgAcccgggcgagcgggcGCGUCUUcgaGAGGa- -3' miRNA: 3'- -CGGGCUCGGGGgU---------------CGCAGAA---CUUCag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 993 | 0.67 | 0.755083 |
Target: 5'- cGCCgGGGUCCUgGGgGUCc-GggGUCg -3' miRNA: 3'- -CGGgCUCGGGGgUCgCAGaaCuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 24586 | 0.67 | 0.755083 |
Target: 5'- cGUCCGAGUCCagcuccaCGGCGUCgaacucggUUGcGGUCa -3' miRNA: 3'- -CGGGCUCGGGg------GUCGCAG--------AACuUCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 32920 | 0.67 | 0.76449 |
Target: 5'- aGCCCGGGCgUCCGGC-UCgcgccgGAcGUCg -3' miRNA: 3'- -CGGGCUCGgGGGUCGcAGaa----CUuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 90711 | 0.67 | 0.76449 |
Target: 5'- cCCaCGGGCCCCU-GCG-CUUGggGg- -3' miRNA: 3'- cGG-GCUCGGGGGuCGCaGAACuuCag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 13107 | 0.67 | 0.76449 |
Target: 5'- cGCCCGGGCCCgCCucgccGCGUCcaggccGggG-Cg -3' miRNA: 3'- -CGGGCUCGGG-GGu----CGCAGaa----CuuCaG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 129320 | 0.67 | 0.76449 |
Target: 5'- gGCCuCGGcGCCgCCGGCGaCgcgGAGGUCc -3' miRNA: 3'- -CGG-GCU-CGGgGGUCGCaGaa-CUUCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 141363 | 0.67 | 0.773783 |
Target: 5'- aCCCGuuccAGaCCCCCAGCGUCccc--GUCg -3' miRNA: 3'- cGGGC----UC-GGGGGUCGCAGaacuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 33687 | 0.67 | 0.782952 |
Target: 5'- cGCCuCGGGCa-CCGGCGUCgcgGccGUCg -3' miRNA: 3'- -CGG-GCUCGggGGUCGCAGaa-CuuCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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