miRNA display CGI


Results 61 - 80 of 128 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21572 5' -58 NC_004812.1 + 120660 0.67 0.782952
Target:  5'- cGCCCGGGCCCCCGugaccGCGgcgCUg------ -3'
miRNA:   3'- -CGGGCUCGGGGGU-----CGCa--GAacuucag -5'
21572 5' -58 NC_004812.1 + 33687 0.67 0.782952
Target:  5'- cGCCuCGGGCa-CCGGCGUCgcgGccGUCg -3'
miRNA:   3'- -CGG-GCUCGggGGUCGCAGaa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 141363 0.67 0.773783
Target:  5'- aCCCGuuccAGaCCCCCAGCGUCccc--GUCg -3'
miRNA:   3'- cGGGC----UC-GGGGGUCGCAGaacuuCAG- -5'
21572 5' -58 NC_004812.1 + 129320 0.67 0.76449
Target:  5'- gGCCuCGGcGCCgCCGGCGaCgcgGAGGUCc -3'
miRNA:   3'- -CGG-GCU-CGGgGGUCGCaGaa-CUUCAG- -5'
21572 5' -58 NC_004812.1 + 13107 0.67 0.76449
Target:  5'- cGCCCGGGCCCgCCucgccGCGUCcaggccGggG-Cg -3'
miRNA:   3'- -CGGGCUCGGG-GGu----CGCAGaa----CuuCaG- -5'
21572 5' -58 NC_004812.1 + 90711 0.67 0.76449
Target:  5'- cCCaCGGGCCCCU-GCG-CUUGggGg- -3'
miRNA:   3'- cGG-GCUCGGGGGuCGCaGAACuuCag -5'
21572 5' -58 NC_004812.1 + 1281 0.68 0.716486
Target:  5'- uUCCG-GCCCCCAGgGUCcccgGAGG-Cg -3'
miRNA:   3'- cGGGCuCGGGGGUCgCAGaa--CUUCaG- -5'
21572 5' -58 NC_004812.1 + 33122 0.68 0.726262
Target:  5'- gGCCCG-GCCCgCCgccgaggugGGgGUCUcgGggGUCu -3'
miRNA:   3'- -CGGGCuCGGG-GG---------UCgCAGAa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 115459 0.68 0.73596
Target:  5'- gGCUCGAaauaaaGCCCCCcGCGUCUcGguGUUg -3'
miRNA:   3'- -CGGGCU------CGGGGGuCGCAGAaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 1222 0.68 0.716486
Target:  5'- gGCCCG-GCCCCCGGgGUUccUGgcGg- -3'
miRNA:   3'- -CGGGCuCGGGGGUCgCAGa-ACuuCag -5'
21572 5' -58 NC_004812.1 + 134631 0.68 0.706639
Target:  5'- uGCCUGuuCCUCCAGCGgCUgggcccgGAGGUCc -3'
miRNA:   3'- -CGGGCucGGGGGUCGCaGAa------CUUCAG- -5'
21572 5' -58 NC_004812.1 + 108308 0.68 0.695736
Target:  5'- cGCCCGAGCCCgCAcgcgcguGCGUCccaUGuucGUCu -3'
miRNA:   3'- -CGGGCUCGGGgGU-------CGCAGa--ACuu-CAG- -5'
21572 5' -58 NC_004812.1 + 75087 0.68 0.734994
Target:  5'- -aCCGAGCgcgccugCUCCAGCGUCUUGGc--- -3'
miRNA:   3'- cgGGCUCG-------GGGGUCGCAGAACUucag -5'
21572 5' -58 NC_004812.1 + 139008 0.68 0.726262
Target:  5'- cGCCCGGGCCCgCCucgcccGCaGUCUgcu-GUCg -3'
miRNA:   3'- -CGGGCUCGGG-GGu-----CG-CAGAacuuCAG- -5'
21572 5' -58 NC_004812.1 + 61427 0.68 0.726262
Target:  5'- aCCCGcGCgCCCCGGCcGUCU-GAGGg- -3'
miRNA:   3'- cGGGCuCG-GGGGUCG-CAGAaCUUCag -5'
21572 5' -58 NC_004812.1 + 2221 0.68 0.726262
Target:  5'- gGCCCG-GCCCgCCgccgaggugGGgGUCUcgGggGUCu -3'
miRNA:   3'- -CGGGCuCGGG-GG---------UCgCAGAa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 126789 0.68 0.716486
Target:  5'- uUCCG-GCCCCCAGgGUCcccgGAGG-Cg -3'
miRNA:   3'- cGGGCuCGGGGGUCgCAGaa--CUUCaG- -5'
21572 5' -58 NC_004812.1 + 103147 0.68 0.716486
Target:  5'- -aCCGGGCCCgCuGCGUCU-GGAG-Cg -3'
miRNA:   3'- cgGGCUCGGGgGuCGCAGAaCUUCaG- -5'
21572 5' -58 NC_004812.1 + 21126 0.68 0.716486
Target:  5'- gGCCUGGGCCUgCAGCGaCacgUUGguGUCg -3'
miRNA:   3'- -CGGGCUCGGGgGUCGCaG---AACuuCAG- -5'
21572 5' -58 NC_004812.1 + 105213 0.68 0.716486
Target:  5'- gGCgCGGGCCCCgGGC-UCUUcGAAGg- -3'
miRNA:   3'- -CGgGCUCGGGGgUCGcAGAA-CUUCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.