Results 81 - 100 of 128 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21572 | 5' | -58 | NC_004812.1 | + | 108308 | 0.68 | 0.695736 |
Target: 5'- cGCCCGAGCCCgCAcgcgcguGCGUCccaUGuucGUCu -3' miRNA: 3'- -CGGGCUCGGGgGU-------CGCAGa--ACuu-CAG- -5' |
|||||||
21572 | 5' | -58 | NC_004812.1 | + | 75087 | 0.68 | 0.734994 |
Target: 5'- -aCCGAGCgcgccugCUCCAGCGUCUUGGc--- -3' miRNA: 3'- cgGGCUCG-------GGGGUCGCAGAACUucag -5' |
|||||||
21572 | 5' | -58 | NC_004812.1 | + | 30130 | 0.68 | 0.73596 |
Target: 5'- uCCCGcAGCCCCCGGgGUgguu-GGUCa -3' miRNA: 3'- cGGGC-UCGGGGGUCgCAgaacuUCAG- -5' |
|||||||
21572 | 5' | -58 | NC_004812.1 | + | 106236 | 0.68 | 0.73596 |
Target: 5'- uGCaCGcGCCCCCGGCGUCg-GggG-Cg -3' miRNA: 3'- -CGgGCuCGGGGGUCGCAGaaCuuCaG- -5' |
|||||||
21572 | 5' | -58 | NC_004812.1 | + | 135760 | 0.68 | 0.73596 |
Target: 5'- gGCCaCGAGCCCCCcuccgcccacGCGUC----GGUCa -3' miRNA: 3'- -CGG-GCUCGGGGGu---------CGCAGaacuUCAG- -5' |
|||||||
21572 | 5' | -58 | NC_004812.1 | + | 130329 | 0.68 | 0.73596 |
Target: 5'- cGCCCGAGgCCUCgucGGCGUCcaGggG-Ca -3' miRNA: 3'- -CGGGCUCgGGGG---UCGCAGaaCuuCaG- -5' |
|||||||
21572 | 5' | -58 | NC_004812.1 | + | 119394 | 0.69 | 0.676764 |
Target: 5'- uGCCCgGGGCCCCCcGCGUgCccGggGg- -3' miRNA: 3'- -CGGG-CUCGGGGGuCGCA-GaaCuuCag -5' |
|||||||
21572 | 5' | -58 | NC_004812.1 | + | 150156 | 0.69 | 0.676764 |
Target: 5'- cCCCGGGCCCgCGGuCGUCccgGcGGUCc -3' miRNA: 3'- cGGGCUCGGGgGUC-GCAGaa-CuUCAG- -5' |
|||||||
21572 | 5' | -58 | NC_004812.1 | + | 119255 | 0.69 | 0.676764 |
Target: 5'- cCCCGGGCCCgCGGuCGUCccgGcGGUCc -3' miRNA: 3'- cGGGCUCGGGgGUC-GCAGaa-CuUCAG- -5' |
|||||||
21572 | 5' | -58 | NC_004812.1 | + | 91881 | 0.69 | 0.656655 |
Target: 5'- gGCCCGGgggcgcgcauGCCCgCGGCcUCgggGAAGUCg -3' miRNA: 3'- -CGGGCU----------CGGGgGUCGcAGaa-CUUCAG- -5' |
|||||||
21572 | 5' | -58 | NC_004812.1 | + | 46834 | 0.69 | 0.676764 |
Target: 5'- cUgCGGGCCCCCgAGCGUCUgccAGUa -3' miRNA: 3'- cGgGCUCGGGGG-UCGCAGAacuUCAg -5' |
|||||||
21572 | 5' | -58 | NC_004812.1 | + | 13052 | 0.69 | 0.655647 |
Target: 5'- cCCCGGucGCCCCCAGCGaCagGAgcucgcgGGUCa -3' miRNA: 3'- cGGGCU--CGGGGGUCGCaGaaCU-------UCAG- -5' |
|||||||
21572 | 5' | -58 | NC_004812.1 | + | 5753 | 0.69 | 0.646568 |
Target: 5'- cGCCCaGGCCCacagggaCAGCGUCagcagcgcGggGUCg -3' miRNA: 3'- -CGGGcUCGGGg------GUCGCAGaa------CuuCAG- -5' |
|||||||
21572 | 5' | -58 | NC_004812.1 | + | 150295 | 0.69 | 0.676764 |
Target: 5'- uGCCCgGGGCCCCCcGCGUgCccGggGg- -3' miRNA: 3'- -CGGG-CUCGGGGGuCGCA-GaaCuuCag -5' |
|||||||
21572 | 5' | -58 | NC_004812.1 | + | 36654 | 0.69 | 0.646568 |
Target: 5'- cGCCCaGGCCCacagggaCAGCGUCagcagcgcGggGUCg -3' miRNA: 3'- -CGGGcUCGGGg------GUCGCAGaa------CuuCAG- -5' |
|||||||
21572 | 5' | -58 | NC_004812.1 | + | 40491 | 0.69 | 0.646568 |
Target: 5'- gGCCCGGGCCCCgagGGCGggcgCgggGGAGg- -3' miRNA: 3'- -CGGGCUCGGGGg--UCGCa---Gaa-CUUCag -5' |
|||||||
21572 | 5' | -58 | NC_004812.1 | + | 14521 | 0.7 | 0.626368 |
Target: 5'- uGCCCGAGCCggcguuCCCGGUGa--UGAGGUa -3' miRNA: 3'- -CGGGCUCGG------GGGUCGCagaACUUCAg -5' |
|||||||
21572 | 5' | -58 | NC_004812.1 | + | 121518 | 0.7 | 0.626368 |
Target: 5'- cGCCgCGGgggcGCCCUCGGCGUCcacgUGGcgGGUCu -3' miRNA: 3'- -CGG-GCU----CGGGGGUCGCAGa---ACU--UCAG- -5' |
|||||||
21572 | 5' | -58 | NC_004812.1 | + | 94798 | 0.7 | 0.63647 |
Target: 5'- gGCCCacgcGGGCCCCCgcGGCGguggCUgGAGGUg -3' miRNA: 3'- -CGGG----CUCGGGGG--UCGCa---GAaCUUCAg -5' |
|||||||
21572 | 5' | -58 | NC_004812.1 | + | 63533 | 0.7 | 0.63647 |
Target: 5'- gGCCCGAG-CUCCAGgGUCgu-GGGUCc -3' miRNA: 3'- -CGGGCUCgGGGGUCgCAGaacUUCAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home