miRNA display CGI


Results 61 - 80 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21572 5' -58 NC_004812.1 + 126789 0.68 0.716486
Target:  5'- uUCCG-GCCCCCAGgGUCcccgGAGG-Cg -3'
miRNA:   3'- cGGGCuCGGGGGUCgCAGaa--CUUCaG- -5'
21572 5' -58 NC_004812.1 + 135760 0.68 0.73596
Target:  5'- gGCCaCGAGCCCCCcuccgcccacGCGUC----GGUCa -3'
miRNA:   3'- -CGG-GCUCGGGGGu---------CGCAGaacuUCAG- -5'
21572 5' -58 NC_004812.1 + 129320 0.67 0.76449
Target:  5'- gGCCuCGGcGCCgCCGGCGaCgcgGAGGUCc -3'
miRNA:   3'- -CGG-GCU-CGGgGGUCGCaGaa-CUUCAG- -5'
21572 5' -58 NC_004812.1 + 24586 0.67 0.755083
Target:  5'- cGUCCGAGUCCagcuccaCGGCGUCgaacucggUUGcGGUCa -3'
miRNA:   3'- -CGGGCUCGGGg------GUCGCAG--------AACuUCAG- -5'
21572 5' -58 NC_004812.1 + 993 0.67 0.755083
Target:  5'- cGCCgGGGUCCUgGGgGUCc-GggGUCg -3'
miRNA:   3'- -CGGgCUCGGGGgUCgCAGaaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 99253 0.67 0.800887
Target:  5'- cGUCCGGGCCggaggcacgcaCCGGCGgcccgUGggGUCc -3'
miRNA:   3'- -CGGGCUCGGg----------GGUCGCaga--ACuuCAG- -5'
21572 5' -58 NC_004812.1 + 32920 0.67 0.76449
Target:  5'- aGCCCGGGCgUCCGGC-UCgcgccgGAcGUCg -3'
miRNA:   3'- -CGGGCUCGgGGGUCGcAGaa----CUuCAG- -5'
21572 5' -58 NC_004812.1 + 90711 0.67 0.76449
Target:  5'- cCCaCGGGCCCCU-GCG-CUUGggGg- -3'
miRNA:   3'- cGG-GCUCGGGGGuCGCaGAACuuCag -5'
21572 5' -58 NC_004812.1 + 13107 0.67 0.76449
Target:  5'- cGCCCGGGCCCgCCucgccGCGUCcaggccGggG-Cg -3'
miRNA:   3'- -CGGGCUCGGG-GGu----CGCAGaa----CuuCaG- -5'
21572 5' -58 NC_004812.1 + 4457 0.67 0.804405
Target:  5'- cGCCCGAGUaCCCCGGCGaccccgcccacggccUCUggaUGAccccGGUg -3'
miRNA:   3'- -CGGGCUCG-GGGGUCGC---------------AGA---ACU----UCAg -5'
21572 5' -58 NC_004812.1 + 105925 0.67 0.800887
Target:  5'- -gCCGAGUCCCCGGCGaCgcacaGAGG-Ca -3'
miRNA:   3'- cgGGCUCGGGGGUCGCaGaa---CUUCaG- -5'
21572 5' -58 NC_004812.1 + 25061 0.67 0.800887
Target:  5'- cGCCCGAGUCCCacgcgAGCGg---GGAGa- -3'
miRNA:   3'- -CGGGCUCGGGGg----UCGCagaaCUUCag -5'
21572 5' -58 NC_004812.1 + 98520 0.67 0.79199
Target:  5'- uCCCGGGCggCCCCGGCGaCgaGccGUCg -3'
miRNA:   3'- cGGGCUCG--GGGGUCGCaGaaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 111437 0.67 0.79199
Target:  5'- gGCuCCG-GCCCCCGG-GUCaUGAucGUCc -3'
miRNA:   3'- -CG-GGCuCGGGGGUCgCAGaACUu-CAG- -5'
21572 5' -58 NC_004812.1 + 42941 0.67 0.755083
Target:  5'- aGCgCGAGCaCgCCGcGgGUCUUGAGGUa -3'
miRNA:   3'- -CGgGCUCG-GgGGU-CgCAGAACUUCAg -5'
21572 5' -58 NC_004812.1 + 120660 0.67 0.782952
Target:  5'- cGCCCGGGCCCCCGugaccGCGgcgCUg------ -3'
miRNA:   3'- -CGGGCUCGGGGGU-----CGCa--GAacuucag -5'
21572 5' -58 NC_004812.1 + 139859 0.67 0.755083
Target:  5'- gGCCCGcGGCCCCCggGGCGcCcUGc-GUCg -3'
miRNA:   3'- -CGGGC-UCGGGGG--UCGCaGaACuuCAG- -5'
21572 5' -58 NC_004812.1 + 33687 0.67 0.782952
Target:  5'- cGCCuCGGGCa-CCGGCGUCgcgGccGUCg -3'
miRNA:   3'- -CGG-GCUCGggGGUCGCAGaa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 141363 0.67 0.773783
Target:  5'- aCCCGuuccAGaCCCCCAGCGUCccc--GUCg -3'
miRNA:   3'- cGGGC----UC-GGGGGUCGCAGaacuuCAG- -5'
21572 5' -58 NC_004812.1 + 71305 0.67 0.755083
Target:  5'- uGCCCGGGCUUCCGGUGUgCgcggcuucgUGggGcCc -3'
miRNA:   3'- -CGGGCUCGGGGGUCGCA-Ga--------ACuuCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.