miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21572 5' -58 NC_004812.1 + 12943 1.12 0.001178
Target:  5'- cGCCCGAGCCCCCAGCGUCUUGAAGUCg -3'
miRNA:   3'- -CGGGCUCGGGGGUCGCAGAACUUCAG- -5'
21572 5' -58 NC_004812.1 + 126019 0.77 0.279803
Target:  5'- cGCCCGA-CCCCCGGCGggcgcUCUUcugcGAGGUCu -3'
miRNA:   3'- -CGGGCUcGGGGGUCGC-----AGAA----CUUCAG- -5'
21572 5' -58 NC_004812.1 + 108999 0.76 0.293026
Target:  5'- cCCCGAGCCCgUCGGCGcgCUcGggGUCg -3'
miRNA:   3'- cGGGCUCGGG-GGUCGCa-GAaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 97022 0.75 0.35076
Target:  5'- cGCCCGcGCCCCCaucGGCGUCUUcGGGa- -3'
miRNA:   3'- -CGGGCuCGGGGG---UCGCAGAAcUUCag -5'
21572 5' -58 NC_004812.1 + 38815 0.74 0.3744
Target:  5'- uCUCGAGCUcgUCCAGCGUCUcgcgguUGAGGUCc -3'
miRNA:   3'- cGGGCUCGG--GGGUCGCAGA------ACUUCAG- -5'
21572 5' -58 NC_004812.1 + 126731 0.74 0.407557
Target:  5'- gGCCCG-GCCCCCGGgGUCcUGgcGg- -3'
miRNA:   3'- -CGGGCuCGGGGGUCgCAGaACuuCag -5'
21572 5' -58 NC_004812.1 + 94156 0.73 0.42481
Target:  5'- cGCCUGGGCCagaaGGCGUCUUGGccaaAGUCc -3'
miRNA:   3'- -CGGGCUCGGggg-UCGCAGAACU----UCAG- -5'
21572 5' -58 NC_004812.1 + 3289 0.73 0.42481
Target:  5'- cGCCCGGGCCCaCCGcGCGUCcacccGAGGa- -3'
miRNA:   3'- -CGGGCUCGGG-GGU-CGCAGaa---CUUCag -5'
21572 5' -58 NC_004812.1 + 34190 0.73 0.42481
Target:  5'- cGCCCGGGCCCaCCGcGCGUCcacccGAGGa- -3'
miRNA:   3'- -CGGGCUCGGG-GGU-CGCAGaa---CUUCag -5'
21572 5' -58 NC_004812.1 + 41874 0.73 0.442492
Target:  5'- cCCCG-GCUCCCGGCGUCgcUGGAG-Cg -3'
miRNA:   3'- cGGGCuCGGGGGUCGCAGa-ACUUCaG- -5'
21572 5' -58 NC_004812.1 + 70633 0.72 0.469773
Target:  5'- gGCCCGgucuccAGCCUCUGGCGcCcUGggGUCg -3'
miRNA:   3'- -CGGGC------UCGGGGGUCGCaGaACuuCAG- -5'
21572 5' -58 NC_004812.1 + 102050 0.72 0.497886
Target:  5'- uCCCGcGGCgCCCCGGCGcCgucGGAGUCg -3'
miRNA:   3'- cGGGC-UCG-GGGGUCGCaGaa-CUUCAG- -5'
21572 5' -58 NC_004812.1 + 125854 0.72 0.497886
Target:  5'- cGCCCGcGGCCCCgGGCaUCgUGGAGcUCg -3'
miRNA:   3'- -CGGGC-UCGGGGgUCGcAGaACUUC-AG- -5'
21572 5' -58 NC_004812.1 + 44614 0.72 0.507425
Target:  5'- cCCCGccAGCCCCCcGCG-CUUGggGg- -3'
miRNA:   3'- cGGGC--UCGGGGGuCGCaGAACuuCag -5'
21572 5' -58 NC_004812.1 + 25753 0.72 0.507425
Target:  5'- gGCCCccgGGGCCCCCacuugAGCGUCgagGccGUCg -3'
miRNA:   3'- -CGGG---CUCGGGGG-----UCGCAGaa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 113451 0.72 0.513185
Target:  5'- cGCCCGGGCCgCCgCGGUGUCgcggacccugcgGGAGUg -3'
miRNA:   3'- -CGGGCUCGG-GG-GUCGCAGaa----------CUUCAg -5'
21572 5' -58 NC_004812.1 + 78653 0.71 0.536483
Target:  5'- gGCCgGGGCCCCCucuGgGUUg-GggGUCg -3'
miRNA:   3'- -CGGgCUCGGGGGu--CgCAGaaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 94507 0.71 0.5463
Target:  5'- cGCCCGAGCaaCCCCAugcgcGCGUCagGcgcGGGUCg -3'
miRNA:   3'- -CGGGCUCG--GGGGU-----CGCAGaaC---UUCAG- -5'
21572 5' -58 NC_004812.1 + 117696 0.71 0.566099
Target:  5'- gGCCCGcGcCCCCCGGgGUCgcgGGAG-Cg -3'
miRNA:   3'- -CGGGCuC-GGGGGUCgCAGaa-CUUCaG- -5'
21572 5' -58 NC_004812.1 + 148597 0.71 0.566099
Target:  5'- gGCCCGcGcCCCCCGGgGUCgcgGGAG-Cg -3'
miRNA:   3'- -CGGGCuC-GGGGGUCgCAGaa-CUUCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.