Results 21 - 40 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21572 | 5' | -58 | NC_004812.1 | + | 19312 | 0.71 | 0.576068 |
Target: 5'- aCgCGGGCCCCCAGguaCGUgUaGAGGUCg -3' miRNA: 3'- cGgGCUCGGGGGUC---GCAgAaCUUCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 47700 | 0.7 | 0.615261 |
Target: 5'- gGCCgCGGGCCCCCGgGCGUaCUggcUGGugcagcagaagcgGGUCa -3' miRNA: 3'- -CGG-GCUCGGGGGU-CGCA-GA---ACU-------------UCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 72290 | 0.7 | 0.626368 |
Target: 5'- cGCCCGGGgcgcUCCCCGGCGacgCggcccGAGGUCc -3' miRNA: 3'- -CGGGCUC----GGGGGUCGCa--Gaa---CUUCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 152419 | 0.7 | 0.626368 |
Target: 5'- cGCCgCGGgggcGCCCUCGGCGUCcacgUGGcgGGUCu -3' miRNA: 3'- -CGG-GCU----CGGGGGUCGCAGa---ACU--UCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 14521 | 0.7 | 0.626368 |
Target: 5'- uGCCCGAGCCggcguuCCCGGUGa--UGAGGUa -3' miRNA: 3'- -CGGGCUCGG------GGGUCGCagaACUUCAg -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 121518 | 0.7 | 0.626368 |
Target: 5'- cGCCgCGGgggcGCCCUCGGCGUCcacgUGGcgGGUCu -3' miRNA: 3'- -CGG-GCU----CGGGGGUCGCAGa---ACU--UCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 121110 | 0.7 | 0.630409 |
Target: 5'- aCCCGAGCCCCgggucgggggcggguCGGCGggcccgGggGUCc -3' miRNA: 3'- cGGGCUCGGGG---------------GUCGCagaa--CuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 152011 | 0.7 | 0.630409 |
Target: 5'- aCCCGAGCCCCgggucgggggcggguCGGCGggcccgGggGUCc -3' miRNA: 3'- cGGGCUCGGGG---------------GUCGCagaa--CuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 94798 | 0.7 | 0.63647 |
Target: 5'- gGCCCacgcGGGCCCCCgcGGCGguggCUgGAGGUg -3' miRNA: 3'- -CGGG----CUCGGGGG--UCGCa---GAaCUUCAg -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 137131 | 0.7 | 0.63647 |
Target: 5'- cCCCGAGUauCCCCAGCGggucguGGUCa -3' miRNA: 3'- cGGGCUCG--GGGGUCGCagaacuUCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 63533 | 0.7 | 0.63647 |
Target: 5'- gGCCCGAG-CUCCAGgGUCgu-GGGUCc -3' miRNA: 3'- -CGGGCUCgGGGGUCgCAGaacUUCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 49425 | 0.7 | 0.63647 |
Target: 5'- cCCCGGGCCgCC-GCGUCgUGGAcauGUCg -3' miRNA: 3'- cGGGCUCGGgGGuCGCAGaACUU---CAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 36654 | 0.69 | 0.646568 |
Target: 5'- cGCCCaGGCCCacagggaCAGCGUCagcagcgcGggGUCg -3' miRNA: 3'- -CGGGcUCGGGg------GUCGCAGaa------CuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 5753 | 0.69 | 0.646568 |
Target: 5'- cGCCCaGGCCCacagggaCAGCGUCagcagcgcGggGUCg -3' miRNA: 3'- -CGGGcUCGGGg------GUCGCAGaa------CuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 40491 | 0.69 | 0.646568 |
Target: 5'- gGCCCGGGCCCCgagGGCGggcgCgggGGAGg- -3' miRNA: 3'- -CGGGCUCGGGGg--UCGCa---Gaa-CUUCag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 13052 | 0.69 | 0.655647 |
Target: 5'- cCCCGGucGCCCCCAGCGaCagGAgcucgcgGGUCa -3' miRNA: 3'- cGGGCU--CGGGGGUCGCaGaaCU-------UCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 91881 | 0.69 | 0.656655 |
Target: 5'- gGCCCGGgggcgcgcauGCCCgCGGCcUCgggGAAGUCg -3' miRNA: 3'- -CGGGCU----------CGGGgGUCGcAGaa-CUUCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 46834 | 0.69 | 0.676764 |
Target: 5'- cUgCGGGCCCCCgAGCGUCUgccAGUa -3' miRNA: 3'- cGgGCUCGGGGG-UCGCAGAacuUCAg -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 119255 | 0.69 | 0.676764 |
Target: 5'- cCCCGGGCCCgCGGuCGUCccgGcGGUCc -3' miRNA: 3'- cGGGCUCGGGgGUC-GCAGaa-CuUCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 119394 | 0.69 | 0.676764 |
Target: 5'- uGCCCgGGGCCCCCcGCGUgCccGggGg- -3' miRNA: 3'- -CGGG-CUCGGGGGuCGCA-GaaCuuCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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