Results 41 - 60 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21572 | 5' | -58 | NC_004812.1 | + | 150156 | 0.69 | 0.676764 |
Target: 5'- cCCCGGGCCCgCGGuCGUCccgGcGGUCc -3' miRNA: 3'- cGGGCUCGGGgGUC-GCAGaa-CuUCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 150295 | 0.69 | 0.676764 |
Target: 5'- uGCCCgGGGCCCCCcGCGUgCccGggGg- -3' miRNA: 3'- -CGGG-CUCGGGGGuCGCA-GaaCuuCag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 108308 | 0.68 | 0.695736 |
Target: 5'- cGCCCGAGCCCgCAcgcgcguGCGUCccaUGuucGUCu -3' miRNA: 3'- -CGGGCUCGGGgGU-------CGCAGa--ACuu-CAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 107741 | 0.68 | 0.69673 |
Target: 5'- cGCCCGcGGCCgCgAacuGCGUCUUGggGa- -3' miRNA: 3'- -CGGGC-UCGGgGgU---CGCAGAACuuCag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 134631 | 0.68 | 0.706639 |
Target: 5'- uGCCUGuuCCUCCAGCGgCUgggcccgGAGGUCc -3' miRNA: 3'- -CGGGCucGGGGGUCGCaGAa------CUUCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 21126 | 0.68 | 0.716486 |
Target: 5'- gGCCUGGGCCUgCAGCGaCacgUUGguGUCg -3' miRNA: 3'- -CGGGCUCGGGgGUCGCaG---AACuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 1281 | 0.68 | 0.716486 |
Target: 5'- uUCCG-GCCCCCAGgGUCcccgGAGG-Cg -3' miRNA: 3'- cGGGCuCGGGGGUCgCAGaa--CUUCaG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 126789 | 0.68 | 0.716486 |
Target: 5'- uUCCG-GCCCCCAGgGUCcccgGAGG-Cg -3' miRNA: 3'- cGGGCuCGGGGGUCgCAGaa--CUUCaG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 103147 | 0.68 | 0.716486 |
Target: 5'- -aCCGGGCCCgCuGCGUCU-GGAG-Cg -3' miRNA: 3'- cgGGCUCGGGgGuCGCAGAaCUUCaG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 1222 | 0.68 | 0.716486 |
Target: 5'- gGCCCG-GCCCCCGGgGUUccUGgcGg- -3' miRNA: 3'- -CGGGCuCGGGGGUCgCAGa-ACuuCag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 105213 | 0.68 | 0.716486 |
Target: 5'- gGCgCGGGCCCCgGGC-UCUUcGAAGg- -3' miRNA: 3'- -CGgGCUCGGGGgUCGcAGAA-CUUCag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 33122 | 0.68 | 0.726262 |
Target: 5'- gGCCCG-GCCCgCCgccgaggugGGgGUCUcgGggGUCu -3' miRNA: 3'- -CGGGCuCGGG-GG---------UCgCAGAa-CuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 2221 | 0.68 | 0.726262 |
Target: 5'- gGCCCG-GCCCgCCgccgaggugGGgGUCUcgGggGUCu -3' miRNA: 3'- -CGGGCuCGGG-GG---------UCgCAGAa-CuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 61427 | 0.68 | 0.726262 |
Target: 5'- aCCCGcGCgCCCCGGCcGUCU-GAGGg- -3' miRNA: 3'- cGGGCuCG-GGGGUCG-CAGAaCUUCag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 139008 | 0.68 | 0.726262 |
Target: 5'- cGCCCGGGCCCgCCucgcccGCaGUCUgcu-GUCg -3' miRNA: 3'- -CGGGCUCGGG-GGu-----CG-CAGAacuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 75087 | 0.68 | 0.734994 |
Target: 5'- -aCCGAGCgcgccugCUCCAGCGUCUUGGc--- -3' miRNA: 3'- cgGGCUCG-------GGGGUCGCAGAACUucag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 30130 | 0.68 | 0.73596 |
Target: 5'- uCCCGcAGCCCCCGGgGUgguu-GGUCa -3' miRNA: 3'- cGGGC-UCGGGGGUCgCAgaacuUCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 106236 | 0.68 | 0.73596 |
Target: 5'- uGCaCGcGCCCCCGGCGUCg-GggG-Cg -3' miRNA: 3'- -CGgGCuCGGGGGUCGCAGaaCuuCaG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 135760 | 0.68 | 0.73596 |
Target: 5'- gGCCaCGAGCCCCCcuccgcccacGCGUC----GGUCa -3' miRNA: 3'- -CGG-GCUCGGGGGu---------CGCAGaacuUCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 130329 | 0.68 | 0.73596 |
Target: 5'- cGCCCGAGgCCUCgucGGCGUCcaGggG-Ca -3' miRNA: 3'- -CGGGCUCgGGGG---UCGCAGaaCuuCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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