miRNA display CGI


Results 61 - 80 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21572 5' -58 NC_004812.1 + 115459 0.68 0.73596
Target:  5'- gGCUCGAaauaaaGCCCCCcGCGUCUcGguGUUg -3'
miRNA:   3'- -CGGGCU------CGGGGGuCGCAGAaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 4821 0.68 0.73596
Target:  5'- cGCCCGAGgCCUCgucGGCGUCcaGggG-Ca -3'
miRNA:   3'- -CGGGCUCgGGGG---UCGCAGaaCuuCaG- -5'
21572 5' -58 NC_004812.1 + 42941 0.67 0.755083
Target:  5'- aGCgCGAGCaCgCCGcGgGUCUUGAGGUa -3'
miRNA:   3'- -CGgGCUCG-GgGGU-CgCAGAACUUCAg -5'
21572 5' -58 NC_004812.1 + 139859 0.67 0.755083
Target:  5'- gGCCCGcGGCCCCCggGGCGcCcUGc-GUCg -3'
miRNA:   3'- -CGGGC-UCGGGGG--UCGCaGaACuuCAG- -5'
21572 5' -58 NC_004812.1 + 993 0.67 0.755083
Target:  5'- cGCCgGGGUCCUgGGgGUCc-GggGUCg -3'
miRNA:   3'- -CGGgCUCGGGGgUCgCAGaaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 24586 0.67 0.755083
Target:  5'- cGUCCGAGUCCagcuccaCGGCGUCgaacucggUUGcGGUCa -3'
miRNA:   3'- -CGGGCUCGGGg------GUCGCAG--------AACuUCAG- -5'
21572 5' -58 NC_004812.1 + 71305 0.67 0.755083
Target:  5'- uGCCCGGGCUUCCGGUGUgCgcggcuucgUGggGcCc -3'
miRNA:   3'- -CGGGCUCGGGGGUCGCA-Ga--------ACuuCaG- -5'
21572 5' -58 NC_004812.1 + 32920 0.67 0.76449
Target:  5'- aGCCCGGGCgUCCGGC-UCgcgccgGAcGUCg -3'
miRNA:   3'- -CGGGCUCGgGGGUCGcAGaa----CUuCAG- -5'
21572 5' -58 NC_004812.1 + 90711 0.67 0.76449
Target:  5'- cCCaCGGGCCCCU-GCG-CUUGggGg- -3'
miRNA:   3'- cGG-GCUCGGGGGuCGCaGAACuuCag -5'
21572 5' -58 NC_004812.1 + 13107 0.67 0.76449
Target:  5'- cGCCCGGGCCCgCCucgccGCGUCcaggccGggG-Cg -3'
miRNA:   3'- -CGGGCUCGGG-GGu----CGCAGaa----CuuCaG- -5'
21572 5' -58 NC_004812.1 + 58618 0.67 0.76449
Target:  5'- aGCCCGAGCCCCCGuGCcUCccGGc--- -3'
miRNA:   3'- -CGGGCUCGGGGGU-CGcAGaaCUucag -5'
21572 5' -58 NC_004812.1 + 129320 0.67 0.76449
Target:  5'- gGCCuCGGcGCCgCCGGCGaCgcgGAGGUCc -3'
miRNA:   3'- -CGG-GCU-CGGgGGUCGCaGaa-CUUCAG- -5'
21572 5' -58 NC_004812.1 + 3812 0.67 0.76449
Target:  5'- gGCCuCGGcGCCgCCGGCGaCgcgGAGGUCc -3'
miRNA:   3'- -CGG-GCU-CGGgGGUCGCaGaa-CUUCAG- -5'
21572 5' -58 NC_004812.1 + 56920 0.67 0.773783
Target:  5'- -aCCGAGUCCCUGGCGgaggCgggGgcGUCu -3'
miRNA:   3'- cgGGCUCGGGGGUCGCa---Gaa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 129748 0.67 0.773783
Target:  5'- aGCCUGGGCgUCCCGGUGUCccgguuuccGggGUUc -3'
miRNA:   3'- -CGGGCUCG-GGGGUCGCAGaa-------CuuCAG- -5'
21572 5' -58 NC_004812.1 + 85754 0.67 0.773783
Target:  5'- aGCCac-GCCCCCcGCGUCUccucgUGGGcGUCg -3'
miRNA:   3'- -CGGgcuCGGGGGuCGCAGA-----ACUU-CAG- -5'
21572 5' -58 NC_004812.1 + 54733 0.67 0.773783
Target:  5'- aGCCCGGcgcGCCCCCGGgGguaCcUGggGg- -3'
miRNA:   3'- -CGGGCU---CGGGGGUCgCa--GaACuuCag -5'
21572 5' -58 NC_004812.1 + 145021 0.67 0.773783
Target:  5'- cGCCCGccguGUCCCCGGCGagCgcgGAGG-Cg -3'
miRNA:   3'- -CGGGCu---CGGGGGUCGCa-Gaa-CUUCaG- -5'
21572 5' -58 NC_004812.1 + 141363 0.67 0.773783
Target:  5'- aCCCGuuccAGaCCCCCAGCGUCccc--GUCg -3'
miRNA:   3'- cGGGC----UC-GGGGGUCGCAGaacuuCAG- -5'
21572 5' -58 NC_004812.1 + 20171 0.67 0.777466
Target:  5'- cGCUCGGGCCCCgAcccgggcgagcgggcGCGUCUUcgaGAGGa- -3'
miRNA:   3'- -CGGGCUCGGGGgU---------------CGCAGAA---CUUCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.