Results 21 - 40 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21572 | 5' | -58 | NC_004812.1 | + | 22366 | 0.66 | 0.825819 |
Target: 5'- gGCCUGAcgcggcaaagcgcGCCgCCAGCGUCU--GGGUa -3' miRNA: 3'- -CGGGCU-------------CGGgGGUCGCAGAacUUCAg -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 15468 | 0.66 | 0.821618 |
Target: 5'- -gCCGGGCCCCaucGCGUCUccgagccgaagcgucUGggGg- -3' miRNA: 3'- cgGGCUCGGGGgu-CGCAGA---------------ACuuCag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 136948 | 0.66 | 0.818227 |
Target: 5'- cCCCGcGGCCCCCGGCGgUCUc------ -3' miRNA: 3'- cGGGC-UCGGGGGUCGC-AGAacuucag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 21838 | 0.66 | 0.818227 |
Target: 5'- aCCCGAgggcgucgcGCCCUCGGCGUCcgacuccagggUUGcgucuGAGUCa -3' miRNA: 3'- cGGGCU---------CGGGGGUCGCAG-----------AAC-----UUCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 71235 | 0.66 | 0.818227 |
Target: 5'- cGCCCGaAGCacagCUCGGCGUCc--AGGUCg -3' miRNA: 3'- -CGGGC-UCGg---GGGUCGCAGaacUUCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 83867 | 0.66 | 0.818227 |
Target: 5'- cCCCGGGCCCCCGGaCGUgCgcuucgUGGGc-- -3' miRNA: 3'- cGGGCUCGGGGGUC-GCA-Ga-----ACUUcag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 143231 | 0.66 | 0.818227 |
Target: 5'- cCCCGA-CCCCCGGCGcg--GAAGg- -3' miRNA: 3'- cGGGCUcGGGGGUCGCagaaCUUCag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 143264 | 0.66 | 0.818227 |
Target: 5'- cCCCGA-CCCCCGGCGcg--GAAGg- -3' miRNA: 3'- cGGGCUcGGGGGUCGCagaaCUUCag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 111362 | 0.66 | 0.817375 |
Target: 5'- cCCCGAGaCCCCAccgcgcuGUGUCgcggUGAcGUCa -3' miRNA: 3'- cGGGCUCgGGGGU-------CGCAGa---ACUuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 538 | 0.66 | 0.815666 |
Target: 5'- cGCCCGGGCccucccgccucccgCCCCGGCGcgCgcggccgcgUGGAGcCg -3' miRNA: 3'- -CGGGCUCG--------------GGGGUCGCa-Ga--------ACUUCaG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 31439 | 0.66 | 0.815666 |
Target: 5'- cGCCCGGGCccucccgccucccgCCCCGGCGcgCgcggccgcgUGGAGcCg -3' miRNA: 3'- -CGGGCUCG--------------GGGGUCGCa-Ga--------ACUUCaG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 106578 | 0.66 | 0.809635 |
Target: 5'- cGCCCGGGCCgggcgcagaCGGCGcgaUGGAGUCu -3' miRNA: 3'- -CGGGCUCGGgg-------GUCGCagaACUUCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 105241 | 0.66 | 0.809635 |
Target: 5'- aCCCGGgcgggcgacGCgUCCGGUGUUaUGAAGUCa -3' miRNA: 3'- cGGGCU---------CGgGGGUCGCAGaACUUCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 35745 | 0.66 | 0.809635 |
Target: 5'- cCCCGcuacagcgccAGCCCCCgcaggggggaGGCGUCguagaUGAGGUa -3' miRNA: 3'- cGGGC----------UCGGGGG----------UCGCAGa----ACUUCAg -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 138086 | 0.66 | 0.809635 |
Target: 5'- aGCgCGAGCgaagCCCUGGCGggaUGggGUCu -3' miRNA: 3'- -CGgGCUCG----GGGGUCGCagaACuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 75029 | 0.66 | 0.808767 |
Target: 5'- cGCCCGAGCcgaCCCCcuCGUCaagcagaUUGAGGa- -3' miRNA: 3'- -CGGGCUCG---GGGGucGCAG-------AACUUCag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 35358 | 0.67 | 0.804405 |
Target: 5'- cGCCCGAGUaCCCCGGCGaccccgcccacggccUCUggaUGAccccGGUg -3' miRNA: 3'- -CGGGCUCG-GGGGUCGC---------------AGA---ACU----UCAg -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 4457 | 0.67 | 0.804405 |
Target: 5'- cGCCCGAGUaCCCCGGCGaccccgcccacggccUCUggaUGAccccGGUg -3' miRNA: 3'- -CGGGCUCG-GGGGUCGC---------------AGA---ACU----UCAg -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 105925 | 0.67 | 0.800887 |
Target: 5'- -gCCGAGUCCCCGGCGaCgcacaGAGG-Ca -3' miRNA: 3'- cgGGCUCGGGGGUCGCaGaa---CUUCaG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 25061 | 0.67 | 0.800887 |
Target: 5'- cGCCCGAGUCCCacgcgAGCGg---GGAGa- -3' miRNA: 3'- -CGGGCUCGGGGg----UCGCagaaCUUCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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