miRNA display CGI


Results 61 - 80 of 128 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21572 5' -58 NC_004812.1 + 90711 0.67 0.76449
Target:  5'- cCCaCGGGCCCCU-GCG-CUUGggGg- -3'
miRNA:   3'- cGG-GCUCGGGGGuCGCaGAACuuCag -5'
21572 5' -58 NC_004812.1 + 993 0.67 0.755083
Target:  5'- cGCCgGGGUCCUgGGgGUCc-GggGUCg -3'
miRNA:   3'- -CGGgCUCGGGGgUCgCAGaaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 24586 0.67 0.755083
Target:  5'- cGUCCGAGUCCagcuccaCGGCGUCgaacucggUUGcGGUCa -3'
miRNA:   3'- -CGGGCUCGGGg------GUCGCAG--------AACuUCAG- -5'
21572 5' -58 NC_004812.1 + 139859 0.67 0.755083
Target:  5'- gGCCCGcGGCCCCCggGGCGcCcUGc-GUCg -3'
miRNA:   3'- -CGGGC-UCGGGGG--UCGCaGaACuuCAG- -5'
21572 5' -58 NC_004812.1 + 71305 0.67 0.755083
Target:  5'- uGCCCGGGCUUCCGGUGUgCgcggcuucgUGggGcCc -3'
miRNA:   3'- -CGGGCUCGGGGGUCGCA-Ga--------ACuuCaG- -5'
21572 5' -58 NC_004812.1 + 42941 0.67 0.755083
Target:  5'- aGCgCGAGCaCgCCGcGgGUCUUGAGGUa -3'
miRNA:   3'- -CGgGCUCG-GgGGU-CgCAGAACUUCAg -5'
21572 5' -58 NC_004812.1 + 4821 0.68 0.73596
Target:  5'- cGCCCGAGgCCUCgucGGCGUCcaGggG-Ca -3'
miRNA:   3'- -CGGGCUCgGGGG---UCGCAGaaCuuCaG- -5'
21572 5' -58 NC_004812.1 + 115459 0.68 0.73596
Target:  5'- gGCUCGAaauaaaGCCCCCcGCGUCUcGguGUUg -3'
miRNA:   3'- -CGGGCU------CGGGGGuCGCAGAaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 30130 0.68 0.73596
Target:  5'- uCCCGcAGCCCCCGGgGUgguu-GGUCa -3'
miRNA:   3'- cGGGC-UCGGGGGUCgCAgaacuUCAG- -5'
21572 5' -58 NC_004812.1 + 106236 0.68 0.73596
Target:  5'- uGCaCGcGCCCCCGGCGUCg-GggG-Cg -3'
miRNA:   3'- -CGgGCuCGGGGGUCGCAGaaCuuCaG- -5'
21572 5' -58 NC_004812.1 + 135760 0.68 0.73596
Target:  5'- gGCCaCGAGCCCCCcuccgcccacGCGUC----GGUCa -3'
miRNA:   3'- -CGG-GCUCGGGGGu---------CGCAGaacuUCAG- -5'
21572 5' -58 NC_004812.1 + 130329 0.68 0.73596
Target:  5'- cGCCCGAGgCCUCgucGGCGUCcaGggG-Ca -3'
miRNA:   3'- -CGGGCUCgGGGG---UCGCAGaaCuuCaG- -5'
21572 5' -58 NC_004812.1 + 75087 0.68 0.734994
Target:  5'- -aCCGAGCgcgccugCUCCAGCGUCUUGGc--- -3'
miRNA:   3'- cgGGCUCG-------GGGGUCGCAGAACUucag -5'
21572 5' -58 NC_004812.1 + 33122 0.68 0.726262
Target:  5'- gGCCCG-GCCCgCCgccgaggugGGgGUCUcgGggGUCu -3'
miRNA:   3'- -CGGGCuCGGG-GG---------UCgCAGAa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 2221 0.68 0.726262
Target:  5'- gGCCCG-GCCCgCCgccgaggugGGgGUCUcgGggGUCu -3'
miRNA:   3'- -CGGGCuCGGG-GG---------UCgCAGAa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 61427 0.68 0.726262
Target:  5'- aCCCGcGCgCCCCGGCcGUCU-GAGGg- -3'
miRNA:   3'- cGGGCuCG-GGGGUCG-CAGAaCUUCag -5'
21572 5' -58 NC_004812.1 + 139008 0.68 0.726262
Target:  5'- cGCCCGGGCCCgCCucgcccGCaGUCUgcu-GUCg -3'
miRNA:   3'- -CGGGCUCGGG-GGu-----CG-CAGAacuuCAG- -5'
21572 5' -58 NC_004812.1 + 21126 0.68 0.716486
Target:  5'- gGCCUGGGCCUgCAGCGaCacgUUGguGUCg -3'
miRNA:   3'- -CGGGCUCGGGgGUCGCaG---AACuuCAG- -5'
21572 5' -58 NC_004812.1 + 103147 0.68 0.716486
Target:  5'- -aCCGGGCCCgCuGCGUCU-GGAG-Cg -3'
miRNA:   3'- cgGGCUCGGGgGuCGCAGAaCUUCaG- -5'
21572 5' -58 NC_004812.1 + 1222 0.68 0.716486
Target:  5'- gGCCCG-GCCCCCGGgGUUccUGgcGg- -3'
miRNA:   3'- -CGGGCuCGGGGGUCgCAGa-ACuuCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.