miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21572 5' -58 NC_004812.1 + 458 0.66 0.842983
Target:  5'- aGCCCGGGCCgCCGGCGcgCcUGc-GUg -3'
miRNA:   3'- -CGGGCUCGGgGGUCGCa-GaACuuCAg -5'
21572 5' -58 NC_004812.1 + 538 0.66 0.815666
Target:  5'- cGCCCGGGCccucccgccucccgCCCCGGCGcgCgcggccgcgUGGAGcCg -3'
miRNA:   3'- -CGGGCUCG--------------GGGGUCGCa-Ga--------ACUUCaG- -5'
21572 5' -58 NC_004812.1 + 574 0.66 0.826654
Target:  5'- cGCCCGucccgcggcgcGGCCCCCGGCcccg-GgcGUCc -3'
miRNA:   3'- -CGGGC-----------UCGGGGGUCGcagaaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 993 0.67 0.755083
Target:  5'- cGCCgGGGUCCUgGGgGUCc-GggGUCg -3'
miRNA:   3'- -CGGgCUCGGGGgUCgCAGaaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 1222 0.68 0.716486
Target:  5'- gGCCCG-GCCCCCGGgGUUccUGgcGg- -3'
miRNA:   3'- -CGGGCuCGGGGGUCgCAGa-ACuuCag -5'
21572 5' -58 NC_004812.1 + 1281 0.68 0.716486
Target:  5'- uUCCG-GCCCCCAGgGUCcccgGAGG-Cg -3'
miRNA:   3'- cGGGCuCGGGGGUCgCAGaa--CUUCaG- -5'
21572 5' -58 NC_004812.1 + 1410 0.66 0.842983
Target:  5'- gGCCCG-GCCCCgaCGGCGgccgCggGGAGg- -3'
miRNA:   3'- -CGGGCuCGGGG--GUCGCa---GaaCUUCag -5'
21572 5' -58 NC_004812.1 + 2221 0.68 0.726262
Target:  5'- gGCCCG-GCCCgCCgccgaggugGGgGUCUcgGggGUCu -3'
miRNA:   3'- -CGGGCuCGGG-GG---------UCgCAGAa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 3289 0.73 0.42481
Target:  5'- cGCCCGGGCCCaCCGcGCGUCcacccGAGGa- -3'
miRNA:   3'- -CGGGCUCGGG-GGU-CGCAGaa---CUUCag -5'
21572 5' -58 NC_004812.1 + 3812 0.67 0.76449
Target:  5'- gGCCuCGGcGCCgCCGGCGaCgcgGAGGUCc -3'
miRNA:   3'- -CGG-GCU-CGGgGGUCGCaGaa-CUUCAG- -5'
21572 5' -58 NC_004812.1 + 4457 0.67 0.804405
Target:  5'- cGCCCGAGUaCCCCGGCGaccccgcccacggccUCUggaUGAccccGGUg -3'
miRNA:   3'- -CGGGCUCG-GGGGUCGC---------------AGA---ACU----UCAg -5'
21572 5' -58 NC_004812.1 + 4698 0.66 0.826654
Target:  5'- cGCCCcaGAGCCCCgGGCGgcu----GUCg -3'
miRNA:   3'- -CGGG--CUCGGGGgUCGCagaacuuCAG- -5'
21572 5' -58 NC_004812.1 + 4821 0.68 0.73596
Target:  5'- cGCCCGAGgCCUCgucGGCGUCcaGggG-Ca -3'
miRNA:   3'- -CGGGCUCgGGGG---UCGCAGaaCuuCaG- -5'
21572 5' -58 NC_004812.1 + 5753 0.69 0.646568
Target:  5'- cGCCCaGGCCCacagggaCAGCGUCagcagcgcGggGUCg -3'
miRNA:   3'- -CGGGcUCGGGg------GUCGCAGaa------CuuCAG- -5'
21572 5' -58 NC_004812.1 + 12943 1.12 0.001178
Target:  5'- cGCCCGAGCCCCCAGCGUCUUGAAGUCg -3'
miRNA:   3'- -CGGGCUCGGGGGUCGCAGAACUUCAG- -5'
21572 5' -58 NC_004812.1 + 13052 0.69 0.655647
Target:  5'- cCCCGGucGCCCCCAGCGaCagGAgcucgcgGGUCa -3'
miRNA:   3'- cGGGCU--CGGGGGUCGCaGaaCU-------UCAG- -5'
21572 5' -58 NC_004812.1 + 13107 0.67 0.76449
Target:  5'- cGCCCGGGCCCgCCucgccGCGUCcaggccGggG-Cg -3'
miRNA:   3'- -CGGGCUCGGG-GGu----CGCAGaa----CuuCaG- -5'
21572 5' -58 NC_004812.1 + 14219 0.66 0.826654
Target:  5'- gGCCCc-GCCCCCGGCGgccacggcgCgccgggUGAuGUCg -3'
miRNA:   3'- -CGGGcuCGGGGGUCGCa--------Ga-----ACUuCAG- -5'
21572 5' -58 NC_004812.1 + 14521 0.7 0.626368
Target:  5'- uGCCCGAGCCggcguuCCCGGUGa--UGAGGUa -3'
miRNA:   3'- -CGGGCUCGG------GGGUCGCagaACUUCAg -5'
21572 5' -58 NC_004812.1 + 15468 0.66 0.821618
Target:  5'- -gCCGGGCCCCaucGCGUCUccgagccgaagcgucUGggGg- -3'
miRNA:   3'- cgGGCUCGGGGgu-CGCAGA---------------ACuuCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.