miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21572 5' -58 NC_004812.1 + 19312 0.71 0.576068
Target:  5'- aCgCGGGCCCCCAGguaCGUgUaGAGGUCg -3'
miRNA:   3'- cGgGCUCGGGGGUC---GCAgAaCUUCAG- -5'
21572 5' -58 NC_004812.1 + 20171 0.67 0.777466
Target:  5'- cGCUCGGGCCCCgAcccgggcgagcgggcGCGUCUUcgaGAGGa- -3'
miRNA:   3'- -CGGGCUCGGGGgU---------------CGCAGAA---CUUCag -5'
21572 5' -58 NC_004812.1 + 21126 0.68 0.716486
Target:  5'- gGCCUGGGCCUgCAGCGaCacgUUGguGUCg -3'
miRNA:   3'- -CGGGCUCGGGgGUCGCaG---AACuuCAG- -5'
21572 5' -58 NC_004812.1 + 21838 0.66 0.818227
Target:  5'- aCCCGAgggcgucgcGCCCUCGGCGUCcgacuccagggUUGcgucuGAGUCa -3'
miRNA:   3'- cGGGCU---------CGGGGGUCGCAG-----------AAC-----UUCAG- -5'
21572 5' -58 NC_004812.1 + 22366 0.66 0.825819
Target:  5'- gGCCUGAcgcggcaaagcgcGCCgCCAGCGUCU--GGGUa -3'
miRNA:   3'- -CGGGCU-------------CGGgGGUCGCAGAacUUCAg -5'
21572 5' -58 NC_004812.1 + 24042 0.66 0.826654
Target:  5'- cGCCCGcauccagcaccGCCCCCGGCcgGUCgaGGAGcCc -3'
miRNA:   3'- -CGGGCu----------CGGGGGUCG--CAGaaCUUCaG- -5'
21572 5' -58 NC_004812.1 + 24586 0.67 0.755083
Target:  5'- cGUCCGAGUCCagcuccaCGGCGUCgaacucggUUGcGGUCa -3'
miRNA:   3'- -CGGGCUCGGGg------GUCGCAG--------AACuUCAG- -5'
21572 5' -58 NC_004812.1 + 25061 0.67 0.800887
Target:  5'- cGCCCGAGUCCCacgcgAGCGg---GGAGa- -3'
miRNA:   3'- -CGGGCUCGGGGg----UCGCagaaCUUCag -5'
21572 5' -58 NC_004812.1 + 25753 0.72 0.507425
Target:  5'- gGCCCccgGGGCCCCCacuugAGCGUCgagGccGUCg -3'
miRNA:   3'- -CGGG---CUCGGGGG-----UCGCAGaa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 30130 0.68 0.73596
Target:  5'- uCCCGcAGCCCCCGGgGUgguu-GGUCa -3'
miRNA:   3'- cGGGC-UCGGGGGUCgCAgaacuUCAG- -5'
21572 5' -58 NC_004812.1 + 31359 0.66 0.842983
Target:  5'- aGCCCGGGCCgCCGGCGcgCcUGc-GUg -3'
miRNA:   3'- -CGGGCUCGGgGGUCGCa-GaACuuCAg -5'
21572 5' -58 NC_004812.1 + 31439 0.66 0.815666
Target:  5'- cGCCCGGGCccucccgccucccgCCCCGGCGcgCgcggccgcgUGGAGcCg -3'
miRNA:   3'- -CGGGCUCG--------------GGGGUCGCa-Ga--------ACUUCaG- -5'
21572 5' -58 NC_004812.1 + 32920 0.67 0.76449
Target:  5'- aGCCCGGGCgUCCGGC-UCgcgccgGAcGUCg -3'
miRNA:   3'- -CGGGCUCGgGGGUCGcAGaa----CUuCAG- -5'
21572 5' -58 NC_004812.1 + 33122 0.68 0.726262
Target:  5'- gGCCCG-GCCCgCCgccgaggugGGgGUCUcgGggGUCu -3'
miRNA:   3'- -CGGGCuCGGG-GG---------UCgCAGAa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 33687 0.67 0.782952
Target:  5'- cGCCuCGGGCa-CCGGCGUCgcgGccGUCg -3'
miRNA:   3'- -CGG-GCUCGggGGUCGCAGaa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 34190 0.73 0.42481
Target:  5'- cGCCCGGGCCCaCCGcGCGUCcacccGAGGa- -3'
miRNA:   3'- -CGGGCUCGGG-GGU-CGCAGaa---CUUCag -5'
21572 5' -58 NC_004812.1 + 35358 0.67 0.804405
Target:  5'- cGCCCGAGUaCCCCGGCGaccccgcccacggccUCUggaUGAccccGGUg -3'
miRNA:   3'- -CGGGCUCG-GGGGUCGC---------------AGA---ACU----UCAg -5'
21572 5' -58 NC_004812.1 + 35745 0.66 0.809635
Target:  5'- cCCCGcuacagcgccAGCCCCCgcaggggggaGGCGUCguagaUGAGGUa -3'
miRNA:   3'- cGGGC----------UCGGGGG----------UCGCAGa----ACUUCAg -5'
21572 5' -58 NC_004812.1 + 36654 0.69 0.646568
Target:  5'- cGCCCaGGCCCacagggaCAGCGUCagcagcgcGggGUCg -3'
miRNA:   3'- -CGGGcUCGGGg------GUCGCAGaa------CuuCAG- -5'
21572 5' -58 NC_004812.1 + 38815 0.74 0.3744
Target:  5'- uCUCGAGCUcgUCCAGCGUCUcgcgguUGAGGUCc -3'
miRNA:   3'- cGGGCUCGG--GGGUCGCAGA------ACUUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.