miRNA display CGI


Results 41 - 60 of 128 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21572 5' -58 NC_004812.1 + 40491 0.69 0.646568
Target:  5'- gGCCCGGGCCCCgagGGCGggcgCgggGGAGg- -3'
miRNA:   3'- -CGGGCUCGGGGg--UCGCa---Gaa-CUUCag -5'
21572 5' -58 NC_004812.1 + 41874 0.73 0.442492
Target:  5'- cCCCG-GCUCCCGGCGUCgcUGGAG-Cg -3'
miRNA:   3'- cGGGCuCGGGGGUCGCAGa-ACUUCaG- -5'
21572 5' -58 NC_004812.1 + 42941 0.67 0.755083
Target:  5'- aGCgCGAGCaCgCCGcGgGUCUUGAGGUa -3'
miRNA:   3'- -CGgGCUCG-GgGGU-CgCAGAACUUCAg -5'
21572 5' -58 NC_004812.1 + 43994 0.66 0.830803
Target:  5'- cGCCCGAccggccgGCCUCCucggagccgggGGCGUCguccgcguccucGAAGUCg -3'
miRNA:   3'- -CGGGCU-------CGGGGG-----------UCGCAGaa----------CUUCAG- -5'
21572 5' -58 NC_004812.1 + 44614 0.72 0.507425
Target:  5'- cCCCGccAGCCCCCcGCG-CUUGggGg- -3'
miRNA:   3'- cGGGC--UCGGGGGuCGCaGAACuuCag -5'
21572 5' -58 NC_004812.1 + 45032 0.66 0.834908
Target:  5'- cGCCgaGAGCUCCCGGaaggaGaUCcUGggGUCc -3'
miRNA:   3'- -CGGg-CUCGGGGGUCg----C-AGaACuuCAG- -5'
21572 5' -58 NC_004812.1 + 46462 0.66 0.834908
Target:  5'- gGCCaGGGCCUCC-GCGUCcggGucGUCg -3'
miRNA:   3'- -CGGgCUCGGGGGuCGCAGaa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 46834 0.69 0.676764
Target:  5'- cUgCGGGCCCCCgAGCGUCUgccAGUa -3'
miRNA:   3'- cGgGCUCGGGGG-UCGCAGAacuUCAg -5'
21572 5' -58 NC_004812.1 + 47700 0.7 0.615261
Target:  5'- gGCCgCGGGCCCCCGgGCGUaCUggcUGGugcagcagaagcgGGUCa -3'
miRNA:   3'- -CGG-GCUCGGGGGU-CGCA-GA---ACU-------------UCAG- -5'
21572 5' -58 NC_004812.1 + 49425 0.7 0.63647
Target:  5'- cCCCGGGCCgCC-GCGUCgUGGAcauGUCg -3'
miRNA:   3'- cGGGCUCGGgGGuCGCAGaACUU---CAG- -5'
21572 5' -58 NC_004812.1 + 54733 0.67 0.773783
Target:  5'- aGCCCGGcgcGCCCCCGGgGguaCcUGggGg- -3'
miRNA:   3'- -CGGGCU---CGGGGGUCgCa--GaACuuCag -5'
21572 5' -58 NC_004812.1 + 56920 0.67 0.773783
Target:  5'- -aCCGAGUCCCUGGCGgaggCgggGgcGUCu -3'
miRNA:   3'- cgGGCUCGGGGGUCGCa---Gaa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 58618 0.67 0.76449
Target:  5'- aGCCCGAGCCCCCGuGCcUCccGGc--- -3'
miRNA:   3'- -CGGGCUCGGGGGU-CGcAGaaCUucag -5'
21572 5' -58 NC_004812.1 + 61427 0.68 0.726262
Target:  5'- aCCCGcGCgCCCCGGCcGUCU-GAGGg- -3'
miRNA:   3'- cGGGCuCG-GGGGUCG-CAGAaCUUCag -5'
21572 5' -58 NC_004812.1 + 63533 0.7 0.63647
Target:  5'- gGCCCGAG-CUCCAGgGUCgu-GGGUCc -3'
miRNA:   3'- -CGGGCUCgGGGGUCgCAGaacUUCAG- -5'
21572 5' -58 NC_004812.1 + 67416 0.66 0.850871
Target:  5'- gGCCCcGGCUCCCAGaCGgcg-GggGUg -3'
miRNA:   3'- -CGGGcUCGGGGGUC-GCagaaCuuCAg -5'
21572 5' -58 NC_004812.1 + 70633 0.72 0.469773
Target:  5'- gGCCCGgucuccAGCCUCUGGCGcCcUGggGUCg -3'
miRNA:   3'- -CGGGC------UCGGGGGUCGCaGaACuuCAG- -5'
21572 5' -58 NC_004812.1 + 71235 0.66 0.818227
Target:  5'- cGCCCGaAGCacagCUCGGCGUCc--AGGUCg -3'
miRNA:   3'- -CGGGC-UCGg---GGGUCGCAGaacUUCAG- -5'
21572 5' -58 NC_004812.1 + 71305 0.67 0.755083
Target:  5'- uGCCCGGGCUUCCGGUGUgCgcggcuucgUGggGcCc -3'
miRNA:   3'- -CGGGCUCGGGGGUCGCA-Ga--------ACuuCaG- -5'
21572 5' -58 NC_004812.1 + 72290 0.7 0.626368
Target:  5'- cGCCCGGGgcgcUCCCCGGCGacgCggcccGAGGUCc -3'
miRNA:   3'- -CGGGCUC----GGGGGUCGCa--Gaa---CUUCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.