miRNA display CGI


Results 61 - 80 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21572 5' -58 NC_004812.1 + 72480 0.67 0.800887
Target:  5'- cGCCCGA--CUCCGGUGUCU--AAGUCc -3'
miRNA:   3'- -CGGGCUcgGGGGUCGCAGAacUUCAG- -5'
21572 5' -58 NC_004812.1 + 73432 0.66 0.83245
Target:  5'- cGCCgCGAGCUCCggggccgcgcgccaCGGCGcCagGggGUCg -3'
miRNA:   3'- -CGG-GCUCGGGG--------------GUCGCaGaaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 75029 0.66 0.808767
Target:  5'- cGCCCGAGCcgaCCCCcuCGUCaagcagaUUGAGGa- -3'
miRNA:   3'- -CGGGCUCG---GGGGucGCAG-------AACUUCag -5'
21572 5' -58 NC_004812.1 + 75087 0.68 0.734994
Target:  5'- -aCCGAGCgcgccugCUCCAGCGUCUUGGc--- -3'
miRNA:   3'- cgGGCUCG-------GGGGUCGCAGAACUucag -5'
21572 5' -58 NC_004812.1 + 78653 0.71 0.536483
Target:  5'- gGCCgGGGCCCCCucuGgGUUg-GggGUCg -3'
miRNA:   3'- -CGGgCUCGGGGGu--CgCAGaaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 83220 0.66 0.850871
Target:  5'- gGCgCCGGGCUggCCCAGCGggaUGggGg- -3'
miRNA:   3'- -CG-GGCUCGG--GGGUCGCagaACuuCag -5'
21572 5' -58 NC_004812.1 + 83867 0.66 0.818227
Target:  5'- cCCCGGGCCCCCGGaCGUgCgcuucgUGGGc-- -3'
miRNA:   3'- cGGGCUCGGGGGUC-GCA-Ga-----ACUUcag -5'
21572 5' -58 NC_004812.1 + 85754 0.67 0.773783
Target:  5'- aGCCac-GCCCCCcGCGUCUccucgUGGGcGUCg -3'
miRNA:   3'- -CGGgcuCGGGGGuCGCAGA-----ACUU-CAG- -5'
21572 5' -58 NC_004812.1 + 90711 0.67 0.76449
Target:  5'- cCCaCGGGCCCCU-GCG-CUUGggGg- -3'
miRNA:   3'- cGG-GCUCGGGGGuCGCaGAACuuCag -5'
21572 5' -58 NC_004812.1 + 91881 0.69 0.656655
Target:  5'- gGCCCGGgggcgcgcauGCCCgCGGCcUCgggGAAGUCg -3'
miRNA:   3'- -CGGGCU----------CGGGgGUCGcAGaa-CUUCAG- -5'
21572 5' -58 NC_004812.1 + 94156 0.73 0.42481
Target:  5'- cGCCUGGGCCagaaGGCGUCUUGGccaaAGUCc -3'
miRNA:   3'- -CGGGCUCGGggg-UCGCAGAACU----UCAG- -5'
21572 5' -58 NC_004812.1 + 94507 0.71 0.5463
Target:  5'- cGCCCGAGCaaCCCCAugcgcGCGUCagGcgcGGGUCg -3'
miRNA:   3'- -CGGGCUCG--GGGGU-----CGCAGaaC---UUCAG- -5'
21572 5' -58 NC_004812.1 + 94798 0.7 0.63647
Target:  5'- gGCCCacgcGGGCCCCCgcGGCGguggCUgGAGGUg -3'
miRNA:   3'- -CGGG----CUCGGGGG--UCGCa---GAaCUUCAg -5'
21572 5' -58 NC_004812.1 + 97022 0.75 0.35076
Target:  5'- cGCCCGcGCCCCCaucGGCGUCUUcGGGa- -3'
miRNA:   3'- -CGGGCuCGGGGG---UCGCAGAAcUUCag -5'
21572 5' -58 NC_004812.1 + 98520 0.67 0.79199
Target:  5'- uCCCGGGCggCCCCGGCGaCgaGccGUCg -3'
miRNA:   3'- cGGGCUCG--GGGGUCGCaGaaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 99253 0.67 0.800887
Target:  5'- cGUCCGGGCCggaggcacgcaCCGGCGgcccgUGggGUCc -3'
miRNA:   3'- -CGGGCUCGGg----------GGUCGCaga--ACuuCAG- -5'
21572 5' -58 NC_004812.1 + 102050 0.72 0.497886
Target:  5'- uCCCGcGGCgCCCCGGCGcCgucGGAGUCg -3'
miRNA:   3'- cGGGC-UCG-GGGGUCGCaGaa-CUUCAG- -5'
21572 5' -58 NC_004812.1 + 103147 0.68 0.716486
Target:  5'- -aCCGGGCCCgCuGCGUCU-GGAG-Cg -3'
miRNA:   3'- cgGGCUCGGGgGuCGCAGAaCUUCaG- -5'
21572 5' -58 NC_004812.1 + 105213 0.68 0.716486
Target:  5'- gGCgCGGGCCCCgGGC-UCUUcGAAGg- -3'
miRNA:   3'- -CGgGCUCGGGGgUCGcAGAA-CUUCag -5'
21572 5' -58 NC_004812.1 + 105241 0.66 0.809635
Target:  5'- aCCCGGgcgggcgacGCgUCCGGUGUUaUGAAGUCa -3'
miRNA:   3'- cGGGCU---------CGgGGGUCGCAGaACUUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.