miRNA display CGI


Results 81 - 100 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21572 5' -58 NC_004812.1 + 105925 0.67 0.800887
Target:  5'- -gCCGAGUCCCCGGCGaCgcacaGAGG-Ca -3'
miRNA:   3'- cgGGCUCGGGGGUCGCaGaa---CUUCaG- -5'
21572 5' -58 NC_004812.1 + 106236 0.68 0.73596
Target:  5'- uGCaCGcGCCCCCGGCGUCg-GggG-Cg -3'
miRNA:   3'- -CGgGCuCGGGGGUCGCAGaaCuuCaG- -5'
21572 5' -58 NC_004812.1 + 106578 0.66 0.809635
Target:  5'- cGCCCGGGCCgggcgcagaCGGCGcgaUGGAGUCu -3'
miRNA:   3'- -CGGGCUCGGgg-------GUCGCagaACUUCAG- -5'
21572 5' -58 NC_004812.1 + 106703 0.66 0.850871
Target:  5'- gGCgUCGGGCCCCgGGgGgccCUcGggGUCg -3'
miRNA:   3'- -CG-GGCUCGGGGgUCgCa--GAaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 107741 0.68 0.69673
Target:  5'- cGCCCGcGGCCgCgAacuGCGUCUUGggGa- -3'
miRNA:   3'- -CGGGC-UCGGgGgU---CGCAGAACuuCag -5'
21572 5' -58 NC_004812.1 + 108308 0.68 0.695736
Target:  5'- cGCCCGAGCCCgCAcgcgcguGCGUCccaUGuucGUCu -3'
miRNA:   3'- -CGGGCUCGGGgGU-------CGCAGa--ACuu-CAG- -5'
21572 5' -58 NC_004812.1 + 108999 0.76 0.293026
Target:  5'- cCCCGAGCCCgUCGGCGcgCUcGggGUCg -3'
miRNA:   3'- cGGGCUCGGG-GGUCGCa-GAaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 110797 0.67 0.79199
Target:  5'- cGCUCGucgGGCUCCCgGGCGUCU-GuuGUCu -3'
miRNA:   3'- -CGGGC---UCGGGGG-UCGCAGAaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 111362 0.66 0.817375
Target:  5'- cCCCGAGaCCCCAccgcgcuGUGUCgcggUGAcGUCa -3'
miRNA:   3'- cGGGCUCgGGGGU-------CGCAGa---ACUuCAG- -5'
21572 5' -58 NC_004812.1 + 111437 0.67 0.79199
Target:  5'- gGCuCCG-GCCCCCGG-GUCaUGAucGUCc -3'
miRNA:   3'- -CG-GGCuCGGGGGUCgCAGaACUu-CAG- -5'
21572 5' -58 NC_004812.1 + 113451 0.72 0.513185
Target:  5'- cGCCCGGGCCgCCgCGGUGUCgcggacccugcgGGAGUg -3'
miRNA:   3'- -CGGGCUCGG-GG-GUCGCAGaa----------CUUCAg -5'
21572 5' -58 NC_004812.1 + 115459 0.68 0.73596
Target:  5'- gGCUCGAaauaaaGCCCCCcGCGUCUcGguGUUg -3'
miRNA:   3'- -CGGGCU------CGGGGGuCGCAGAaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 117630 0.66 0.826654
Target:  5'- gGCgCGGGCCgCCgGGCG-CggcGggGUCg -3'
miRNA:   3'- -CGgGCUCGG-GGgUCGCaGaa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 117696 0.71 0.566099
Target:  5'- gGCCCGcGcCCCCCGGgGUCgcgGGAG-Cg -3'
miRNA:   3'- -CGGGCuC-GGGGGUCgCAGaa-CUUCaG- -5'
21572 5' -58 NC_004812.1 + 119255 0.69 0.676764
Target:  5'- cCCCGGGCCCgCGGuCGUCccgGcGGUCc -3'
miRNA:   3'- cGGGCUCGGGgGUC-GCAGaa-CuUCAG- -5'
21572 5' -58 NC_004812.1 + 119394 0.69 0.676764
Target:  5'- uGCCCgGGGCCCCCcGCGUgCccGggGg- -3'
miRNA:   3'- -CGGG-CUCGGGGGuCGCA-GaaCuuCag -5'
21572 5' -58 NC_004812.1 + 120660 0.67 0.782952
Target:  5'- cGCCCGGGCCCCCGugaccGCGgcgCUg------ -3'
miRNA:   3'- -CGGGCUCGGGGGU-----CGCa--GAacuucag -5'
21572 5' -58 NC_004812.1 + 121110 0.7 0.630409
Target:  5'- aCCCGAGCCCCgggucgggggcggguCGGCGggcccgGggGUCc -3'
miRNA:   3'- cGGGCUCGGGG---------------GUCGCagaa--CuuCAG- -5'
21572 5' -58 NC_004812.1 + 121518 0.7 0.626368
Target:  5'- cGCCgCGGgggcGCCCUCGGCGUCcacgUGGcgGGUCu -3'
miRNA:   3'- -CGG-GCU----CGGGGGUCGCAGa---ACU--UCAG- -5'
21572 5' -58 NC_004812.1 + 125854 0.72 0.497886
Target:  5'- cGCCCGcGGCCCCgGGCaUCgUGGAGcUCg -3'
miRNA:   3'- -CGGGC-UCGGGGgUCGcAGaACUUC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.