miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21572 5' -58 NC_004812.1 + 152419 0.7 0.626368
Target:  5'- cGCCgCGGgggcGCCCUCGGCGUCcacgUGGcgGGUCu -3'
miRNA:   3'- -CGG-GCU----CGGGGGUCGCAGa---ACU--UCAG- -5'
21572 5' -58 NC_004812.1 + 152011 0.7 0.630409
Target:  5'- aCCCGAGCCCCgggucgggggcggguCGGCGggcccgGggGUCc -3'
miRNA:   3'- cGGGCUCGGGG---------------GUCGCagaa--CuuCAG- -5'
21572 5' -58 NC_004812.1 + 151561 0.67 0.782952
Target:  5'- cGCCCGGGCCCCCGugaccGCGgcgCUg------ -3'
miRNA:   3'- -CGGGCUCGGGGGU-----CGCa--GAacuucag -5'
21572 5' -58 NC_004812.1 + 150295 0.69 0.676764
Target:  5'- uGCCCgGGGCCCCCcGCGUgCccGggGg- -3'
miRNA:   3'- -CGGG-CUCGGGGGuCGCA-GaaCuuCag -5'
21572 5' -58 NC_004812.1 + 150156 0.69 0.676764
Target:  5'- cCCCGGGCCCgCGGuCGUCccgGcGGUCc -3'
miRNA:   3'- cGGGCUCGGGgGUC-GCAGaa-CuUCAG- -5'
21572 5' -58 NC_004812.1 + 148597 0.71 0.566099
Target:  5'- gGCCCGcGcCCCCCGGgGUCgcgGGAG-Cg -3'
miRNA:   3'- -CGGGCuC-GGGGGUCgCAGaa-CUUCaG- -5'
21572 5' -58 NC_004812.1 + 148531 0.66 0.826654
Target:  5'- gGCgCGGGCCgCCgGGCG-CggcGggGUCg -3'
miRNA:   3'- -CGgGCUCGG-GGgUCGCaGaa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 145021 0.67 0.773783
Target:  5'- cGCCCGccguGUCCCCGGCGagCgcgGAGG-Cg -3'
miRNA:   3'- -CGGGCu---CGGGGGUCGCa-Gaa-CUUCaG- -5'
21572 5' -58 NC_004812.1 + 143264 0.66 0.818227
Target:  5'- cCCCGA-CCCCCGGCGcg--GAAGg- -3'
miRNA:   3'- cGGGCUcGGGGGUCGCagaaCUUCag -5'
21572 5' -58 NC_004812.1 + 143231 0.66 0.818227
Target:  5'- cCCCGA-CCCCCGGCGcg--GAAGg- -3'
miRNA:   3'- cGGGCUcGGGGGUCGCagaaCUUCag -5'
21572 5' -58 NC_004812.1 + 141363 0.67 0.773783
Target:  5'- aCCCGuuccAGaCCCCCAGCGUCccc--GUCg -3'
miRNA:   3'- cGGGC----UC-GGGGGUCGCAGaacuuCAG- -5'
21572 5' -58 NC_004812.1 + 139859 0.67 0.755083
Target:  5'- gGCCCGcGGCCCCCggGGCGcCcUGc-GUCg -3'
miRNA:   3'- -CGGGC-UCGGGGG--UCGCaGaACuuCAG- -5'
21572 5' -58 NC_004812.1 + 139008 0.68 0.726262
Target:  5'- cGCCCGGGCCCgCCucgcccGCaGUCUgcu-GUCg -3'
miRNA:   3'- -CGGGCUCGGG-GGu-----CG-CAGAacuuCAG- -5'
21572 5' -58 NC_004812.1 + 138086 0.66 0.809635
Target:  5'- aGCgCGAGCgaagCCCUGGCGggaUGggGUCu -3'
miRNA:   3'- -CGgGCUCG----GGGGUCGCagaACuuCAG- -5'
21572 5' -58 NC_004812.1 + 137131 0.7 0.63647
Target:  5'- cCCCGAGUauCCCCAGCGggucguGGUCa -3'
miRNA:   3'- cGGGCUCG--GGGGUCGCagaacuUCAG- -5'
21572 5' -58 NC_004812.1 + 136948 0.66 0.818227
Target:  5'- cCCCGcGGCCCCCGGCGgUCUc------ -3'
miRNA:   3'- cGGGC-UCGGGGGUCGC-AGAacuucag -5'
21572 5' -58 NC_004812.1 + 135760 0.68 0.73596
Target:  5'- gGCCaCGAGCCCCCcuccgcccacGCGUC----GGUCa -3'
miRNA:   3'- -CGG-GCUCGGGGGu---------CGCAGaacuUCAG- -5'
21572 5' -58 NC_004812.1 + 134631 0.68 0.706639
Target:  5'- uGCCUGuuCCUCCAGCGgCUgggcccgGAGGUCc -3'
miRNA:   3'- -CGGGCucGGGGGUCGCaGAa------CUUCAG- -5'
21572 5' -58 NC_004812.1 + 131188 0.66 0.850871
Target:  5'- cCCCGGGaCCCCCcuGCGguUCUacgaggUGAAGUg -3'
miRNA:   3'- cGGGCUC-GGGGGu-CGC--AGA------ACUUCAg -5'
21572 5' -58 NC_004812.1 + 130329 0.68 0.73596
Target:  5'- cGCCCGAGgCCUCgucGGCGUCcaGggG-Ca -3'
miRNA:   3'- -CGGGCUCgGGGG---UCGCAGaaCuuCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.