miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21572 5' -58 NC_004812.1 + 130206 0.66 0.826654
Target:  5'- cGCCCcaGAGCCCCgGGCGgcu----GUCg -3'
miRNA:   3'- -CGGG--CUCGGGGgUCGCagaacuuCAG- -5'
21572 5' -58 NC_004812.1 + 129748 0.67 0.773783
Target:  5'- aGCCUGGGCgUCCCGGUGUCccgguuuccGggGUUc -3'
miRNA:   3'- -CGGGCUCG-GGGGUCGCAGaa-------CuuCAG- -5'
21572 5' -58 NC_004812.1 + 129320 0.67 0.76449
Target:  5'- gGCCuCGGcGCCgCCGGCGaCgcgGAGGUCc -3'
miRNA:   3'- -CGG-GCU-CGGgGGUCGCaGaa-CUUCAG- -5'
21572 5' -58 NC_004812.1 + 126918 0.66 0.842983
Target:  5'- gGCCCG-GCCCCgaCGGCGgccgCggGGAGg- -3'
miRNA:   3'- -CGGGCuCGGGG--GUCGCa---GaaCUUCag -5'
21572 5' -58 NC_004812.1 + 126789 0.68 0.716486
Target:  5'- uUCCG-GCCCCCAGgGUCcccgGAGG-Cg -3'
miRNA:   3'- cGGGCuCGGGGGUCgCAGaa--CUUCaG- -5'
21572 5' -58 NC_004812.1 + 126731 0.74 0.407557
Target:  5'- gGCCCG-GCCCCCGGgGUCcUGgcGg- -3'
miRNA:   3'- -CGGGCuCGGGGGUCgCAGaACuuCag -5'
21572 5' -58 NC_004812.1 + 126082 0.66 0.826654
Target:  5'- cGCCCGucccgcggcgcGGCCCCCGGCcccg-GgcGUCc -3'
miRNA:   3'- -CGGGC-----------UCGGGGGUCGcagaaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 126019 0.77 0.279803
Target:  5'- cGCCCGA-CCCCCGGCGggcgcUCUUcugcGAGGUCu -3'
miRNA:   3'- -CGGGCUcGGGGGUCGC-----AGAA----CUUCAG- -5'
21572 5' -58 NC_004812.1 + 125854 0.72 0.497886
Target:  5'- cGCCCGcGGCCCCgGGCaUCgUGGAGcUCg -3'
miRNA:   3'- -CGGGC-UCGGGGgUCGcAGaACUUC-AG- -5'
21572 5' -58 NC_004812.1 + 121518 0.7 0.626368
Target:  5'- cGCCgCGGgggcGCCCUCGGCGUCcacgUGGcgGGUCu -3'
miRNA:   3'- -CGG-GCU----CGGGGGUCGCAGa---ACU--UCAG- -5'
21572 5' -58 NC_004812.1 + 121110 0.7 0.630409
Target:  5'- aCCCGAGCCCCgggucgggggcggguCGGCGggcccgGggGUCc -3'
miRNA:   3'- cGGGCUCGGGG---------------GUCGCagaa--CuuCAG- -5'
21572 5' -58 NC_004812.1 + 120660 0.67 0.782952
Target:  5'- cGCCCGGGCCCCCGugaccGCGgcgCUg------ -3'
miRNA:   3'- -CGGGCUCGGGGGU-----CGCa--GAacuucag -5'
21572 5' -58 NC_004812.1 + 119394 0.69 0.676764
Target:  5'- uGCCCgGGGCCCCCcGCGUgCccGggGg- -3'
miRNA:   3'- -CGGG-CUCGGGGGuCGCA-GaaCuuCag -5'
21572 5' -58 NC_004812.1 + 119255 0.69 0.676764
Target:  5'- cCCCGGGCCCgCGGuCGUCccgGcGGUCc -3'
miRNA:   3'- cGGGCUCGGGgGUC-GCAGaa-CuUCAG- -5'
21572 5' -58 NC_004812.1 + 117696 0.71 0.566099
Target:  5'- gGCCCGcGcCCCCCGGgGUCgcgGGAG-Cg -3'
miRNA:   3'- -CGGGCuC-GGGGGUCgCAGaa-CUUCaG- -5'
21572 5' -58 NC_004812.1 + 117630 0.66 0.826654
Target:  5'- gGCgCGGGCCgCCgGGCG-CggcGggGUCg -3'
miRNA:   3'- -CGgGCUCGG-GGgUCGCaGaa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 115459 0.68 0.73596
Target:  5'- gGCUCGAaauaaaGCCCCCcGCGUCUcGguGUUg -3'
miRNA:   3'- -CGGGCU------CGGGGGuCGCAGAaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 113451 0.72 0.513185
Target:  5'- cGCCCGGGCCgCCgCGGUGUCgcggacccugcgGGAGUg -3'
miRNA:   3'- -CGGGCUCGG-GG-GUCGCAGaa----------CUUCAg -5'
21572 5' -58 NC_004812.1 + 111437 0.67 0.79199
Target:  5'- gGCuCCG-GCCCCCGG-GUCaUGAucGUCc -3'
miRNA:   3'- -CG-GGCuCGGGGGUCgCAGaACUu-CAG- -5'
21572 5' -58 NC_004812.1 + 111362 0.66 0.817375
Target:  5'- cCCCGAGaCCCCAccgcgcuGUGUCgcggUGAcGUCa -3'
miRNA:   3'- cGGGCUCgGGGGU-------CGCAGa---ACUuCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.