miRNA display CGI


Results 61 - 80 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21572 5' -58 NC_004812.1 + 85754 0.67 0.773783
Target:  5'- aGCCac-GCCCCCcGCGUCUccucgUGGGcGUCg -3'
miRNA:   3'- -CGGgcuCGGGGGuCGCAGA-----ACUU-CAG- -5'
21572 5' -58 NC_004812.1 + 83867 0.66 0.818227
Target:  5'- cCCCGGGCCCCCGGaCGUgCgcuucgUGGGc-- -3'
miRNA:   3'- cGGGCUCGGGGGUC-GCA-Ga-----ACUUcag -5'
21572 5' -58 NC_004812.1 + 83220 0.66 0.850871
Target:  5'- gGCgCCGGGCUggCCCAGCGggaUGggGg- -3'
miRNA:   3'- -CG-GGCUCGG--GGGUCGCagaACuuCag -5'
21572 5' -58 NC_004812.1 + 78653 0.71 0.536483
Target:  5'- gGCCgGGGCCCCCucuGgGUUg-GggGUCg -3'
miRNA:   3'- -CGGgCUCGGGGGu--CgCAGaaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 75087 0.68 0.734994
Target:  5'- -aCCGAGCgcgccugCUCCAGCGUCUUGGc--- -3'
miRNA:   3'- cgGGCUCG-------GGGGUCGCAGAACUucag -5'
21572 5' -58 NC_004812.1 + 75029 0.66 0.808767
Target:  5'- cGCCCGAGCcgaCCCCcuCGUCaagcagaUUGAGGa- -3'
miRNA:   3'- -CGGGCUCG---GGGGucGCAG-------AACUUCag -5'
21572 5' -58 NC_004812.1 + 73432 0.66 0.83245
Target:  5'- cGCCgCGAGCUCCggggccgcgcgccaCGGCGcCagGggGUCg -3'
miRNA:   3'- -CGG-GCUCGGGG--------------GUCGCaGaaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 72480 0.67 0.800887
Target:  5'- cGCCCGA--CUCCGGUGUCU--AAGUCc -3'
miRNA:   3'- -CGGGCUcgGGGGUCGCAGAacUUCAG- -5'
21572 5' -58 NC_004812.1 + 72290 0.7 0.626368
Target:  5'- cGCCCGGGgcgcUCCCCGGCGacgCggcccGAGGUCc -3'
miRNA:   3'- -CGGGCUC----GGGGGUCGCa--Gaa---CUUCAG- -5'
21572 5' -58 NC_004812.1 + 71305 0.67 0.755083
Target:  5'- uGCCCGGGCUUCCGGUGUgCgcggcuucgUGggGcCc -3'
miRNA:   3'- -CGGGCUCGGGGGUCGCA-Ga--------ACuuCaG- -5'
21572 5' -58 NC_004812.1 + 71235 0.66 0.818227
Target:  5'- cGCCCGaAGCacagCUCGGCGUCc--AGGUCg -3'
miRNA:   3'- -CGGGC-UCGg---GGGUCGCAGaacUUCAG- -5'
21572 5' -58 NC_004812.1 + 70633 0.72 0.469773
Target:  5'- gGCCCGgucuccAGCCUCUGGCGcCcUGggGUCg -3'
miRNA:   3'- -CGGGC------UCGGGGGUCGCaGaACuuCAG- -5'
21572 5' -58 NC_004812.1 + 67416 0.66 0.850871
Target:  5'- gGCCCcGGCUCCCAGaCGgcg-GggGUg -3'
miRNA:   3'- -CGGGcUCGGGGGUC-GCagaaCuuCAg -5'
21572 5' -58 NC_004812.1 + 63533 0.7 0.63647
Target:  5'- gGCCCGAG-CUCCAGgGUCgu-GGGUCc -3'
miRNA:   3'- -CGGGCUCgGGGGUCgCAGaacUUCAG- -5'
21572 5' -58 NC_004812.1 + 61427 0.68 0.726262
Target:  5'- aCCCGcGCgCCCCGGCcGUCU-GAGGg- -3'
miRNA:   3'- cGGGCuCG-GGGGUCG-CAGAaCUUCag -5'
21572 5' -58 NC_004812.1 + 58618 0.67 0.76449
Target:  5'- aGCCCGAGCCCCCGuGCcUCccGGc--- -3'
miRNA:   3'- -CGGGCUCGGGGGU-CGcAGaaCUucag -5'
21572 5' -58 NC_004812.1 + 56920 0.67 0.773783
Target:  5'- -aCCGAGUCCCUGGCGgaggCgggGgcGUCu -3'
miRNA:   3'- cgGGCUCGGGGGUCGCa---Gaa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 54733 0.67 0.773783
Target:  5'- aGCCCGGcgcGCCCCCGGgGguaCcUGggGg- -3'
miRNA:   3'- -CGGGCU---CGGGGGUCgCa--GaACuuCag -5'
21572 5' -58 NC_004812.1 + 49425 0.7 0.63647
Target:  5'- cCCCGGGCCgCC-GCGUCgUGGAcauGUCg -3'
miRNA:   3'- cGGGCUCGGgGGuCGCAGaACUU---CAG- -5'
21572 5' -58 NC_004812.1 + 47700 0.7 0.615261
Target:  5'- gGCCgCGGGCCCCCGgGCGUaCUggcUGGugcagcagaagcgGGUCa -3'
miRNA:   3'- -CGG-GCUCGGGGGU-CGCA-GA---ACU-------------UCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.