miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21572 5' -58 NC_004812.1 + 119394 0.69 0.676764
Target:  5'- uGCCCgGGGCCCCCcGCGUgCccGggGg- -3'
miRNA:   3'- -CGGG-CUCGGGGGuCGCA-GaaCuuCag -5'
21572 5' -58 NC_004812.1 + 121518 0.7 0.626368
Target:  5'- cGCCgCGGgggcGCCCUCGGCGUCcacgUGGcgGGUCu -3'
miRNA:   3'- -CGG-GCU----CGGGGGUCGCAGa---ACU--UCAG- -5'
21572 5' -58 NC_004812.1 + 121110 0.7 0.630409
Target:  5'- aCCCGAGCCCCgggucgggggcggguCGGCGggcccgGggGUCc -3'
miRNA:   3'- cGGGCUCGGGG---------------GUCGCagaa--CuuCAG- -5'
21572 5' -58 NC_004812.1 + 94798 0.7 0.63647
Target:  5'- gGCCCacgcGGGCCCCCgcGGCGguggCUgGAGGUg -3'
miRNA:   3'- -CGGG----CUCGGGGG--UCGCa---GAaCUUCAg -5'
21572 5' -58 NC_004812.1 + 137131 0.7 0.63647
Target:  5'- cCCCGAGUauCCCCAGCGggucguGGUCa -3'
miRNA:   3'- cGGGCUCG--GGGGUCGCagaacuUCAG- -5'
21572 5' -58 NC_004812.1 + 49425 0.7 0.63647
Target:  5'- cCCCGGGCCgCC-GCGUCgUGGAcauGUCg -3'
miRNA:   3'- cGGGCUCGGgGGuCGCAGaACUU---CAG- -5'
21572 5' -58 NC_004812.1 + 5753 0.69 0.646568
Target:  5'- cGCCCaGGCCCacagggaCAGCGUCagcagcgcGggGUCg -3'
miRNA:   3'- -CGGGcUCGGGg------GUCGCAGaa------CuuCAG- -5'
21572 5' -58 NC_004812.1 + 13052 0.69 0.655647
Target:  5'- cCCCGGucGCCCCCAGCGaCagGAgcucgcgGGUCa -3'
miRNA:   3'- cGGGCU--CGGGGGUCGCaGaaCU-------UCAG- -5'
21572 5' -58 NC_004812.1 + 46834 0.69 0.676764
Target:  5'- cUgCGGGCCCCCgAGCGUCUgccAGUa -3'
miRNA:   3'- cGgGCUCGGGGG-UCGCAGAacuUCAg -5'
21572 5' -58 NC_004812.1 + 14521 0.7 0.626368
Target:  5'- uGCCCGAGCCggcguuCCCGGUGa--UGAGGUa -3'
miRNA:   3'- -CGGGCUCGG------GGGUCGCagaACUUCAg -5'
21572 5' -58 NC_004812.1 + 117696 0.71 0.566099
Target:  5'- gGCCCGcGcCCCCCGGgGUCgcgGGAG-Cg -3'
miRNA:   3'- -CGGGCuC-GGGGGUCgCAGaa-CUUCaG- -5'
21572 5' -58 NC_004812.1 + 78653 0.71 0.536483
Target:  5'- gGCCgGGGCCCCCucuGgGUUg-GggGUCg -3'
miRNA:   3'- -CGGgCUCGGGGGu--CgCAGaaCuuCAG- -5'
21572 5' -58 NC_004812.1 + 38815 0.74 0.3744
Target:  5'- uCUCGAGCUcgUCCAGCGUCUcgcgguUGAGGUCc -3'
miRNA:   3'- cGGGCUCGG--GGGUCGCAGA------ACUUCAG- -5'
21572 5' -58 NC_004812.1 + 126731 0.74 0.407557
Target:  5'- gGCCCG-GCCCCCGGgGUCcUGgcGg- -3'
miRNA:   3'- -CGGGCuCGGGGGUCgCAGaACuuCag -5'
21572 5' -58 NC_004812.1 + 3289 0.73 0.42481
Target:  5'- cGCCCGGGCCCaCCGcGCGUCcacccGAGGa- -3'
miRNA:   3'- -CGGGCUCGGG-GGU-CGCAGaa---CUUCag -5'
21572 5' -58 NC_004812.1 + 41874 0.73 0.442492
Target:  5'- cCCCG-GCUCCCGGCGUCgcUGGAG-Cg -3'
miRNA:   3'- cGGGCuCGGGGGUCGCAGa-ACUUCaG- -5'
21572 5' -58 NC_004812.1 + 70633 0.72 0.469773
Target:  5'- gGCCCGgucuccAGCCUCUGGCGcCcUGggGUCg -3'
miRNA:   3'- -CGGGC------UCGGGGGUCGCaGaACuuCAG- -5'
21572 5' -58 NC_004812.1 + 102050 0.72 0.497886
Target:  5'- uCCCGcGGCgCCCCGGCGcCgucGGAGUCg -3'
miRNA:   3'- cGGGC-UCG-GGGGUCGCaGaa-CUUCAG- -5'
21572 5' -58 NC_004812.1 + 25753 0.72 0.507425
Target:  5'- gGCCCccgGGGCCCCCacuugAGCGUCgagGccGUCg -3'
miRNA:   3'- -CGGG---CUCGGGGG-----UCGCAGaa-CuuCAG- -5'
21572 5' -58 NC_004812.1 + 113451 0.72 0.513185
Target:  5'- cGCCCGGGCCgCCgCGGUGUCgcggacccugcgGGAGUg -3'
miRNA:   3'- -CGGGCUCGG-GG-GUCGCAGaa----------CUUCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.