Results 41 - 60 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21572 | 5' | -58 | NC_004812.1 | + | 70633 | 0.72 | 0.469773 |
Target: 5'- gGCCCGgucuccAGCCUCUGGCGcCcUGggGUCg -3' miRNA: 3'- -CGGGC------UCGGGGGUCGCaGaACuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 41874 | 0.73 | 0.442492 |
Target: 5'- cCCCG-GCUCCCGGCGUCgcUGGAG-Cg -3' miRNA: 3'- cGGGCuCGGGGGUCGCAGa-ACUUCaG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 3289 | 0.73 | 0.42481 |
Target: 5'- cGCCCGGGCCCaCCGcGCGUCcacccGAGGa- -3' miRNA: 3'- -CGGGCUCGGG-GGU-CGCAGaa---CUUCag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 126731 | 0.74 | 0.407557 |
Target: 5'- gGCCCG-GCCCCCGGgGUCcUGgcGg- -3' miRNA: 3'- -CGGGCuCGGGGGUCgCAGaACuuCag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 38815 | 0.74 | 0.3744 |
Target: 5'- uCUCGAGCUcgUCCAGCGUCUcgcgguUGAGGUCc -3' miRNA: 3'- cGGGCUCGG--GGGUCGCAGA------ACUUCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 94798 | 0.7 | 0.63647 |
Target: 5'- gGCCCacgcGGGCCCCCgcGGCGguggCUgGAGGUg -3' miRNA: 3'- -CGGG----CUCGGGGG--UCGCa---GAaCUUCAg -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 137131 | 0.7 | 0.63647 |
Target: 5'- cCCCGAGUauCCCCAGCGggucguGGUCa -3' miRNA: 3'- cGGGCUCG--GGGGUCGCagaacuUCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 61427 | 0.68 | 0.726262 |
Target: 5'- aCCCGcGCgCCCCGGCcGUCU-GAGGg- -3' miRNA: 3'- cGGGCuCG-GGGGUCG-CAGAaCUUCag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 2221 | 0.68 | 0.726262 |
Target: 5'- gGCCCG-GCCCgCCgccgaggugGGgGUCUcgGggGUCu -3' miRNA: 3'- -CGGGCuCGGG-GG---------UCgCAGAa-CuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 126789 | 0.68 | 0.716486 |
Target: 5'- uUCCG-GCCCCCAGgGUCcccgGAGG-Cg -3' miRNA: 3'- cGGGCuCGGGGGUCgCAGaa--CUUCaG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 103147 | 0.68 | 0.716486 |
Target: 5'- -aCCGGGCCCgCuGCGUCU-GGAG-Cg -3' miRNA: 3'- cgGGCUCGGGgGuCGCAGAaCUUCaG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 21126 | 0.68 | 0.716486 |
Target: 5'- gGCCUGGGCCUgCAGCGaCacgUUGguGUCg -3' miRNA: 3'- -CGGGCUCGGGgGUCGCaG---AACuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 105213 | 0.68 | 0.716486 |
Target: 5'- gGCgCGGGCCCCgGGC-UCUUcGAAGg- -3' miRNA: 3'- -CGgGCUCGGGGgUCGcAGAA-CUUCag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 108308 | 0.68 | 0.695736 |
Target: 5'- cGCCCGAGCCCgCAcgcgcguGCGUCccaUGuucGUCu -3' miRNA: 3'- -CGGGCUCGGGgGU-------CGCAGa--ACuu-CAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 119255 | 0.69 | 0.676764 |
Target: 5'- cCCCGGGCCCgCGGuCGUCccgGcGGUCc -3' miRNA: 3'- cGGGCUCGGGgGUC-GCAGaa-CuUCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 119394 | 0.69 | 0.676764 |
Target: 5'- uGCCCgGGGCCCCCcGCGUgCccGggGg- -3' miRNA: 3'- -CGGG-CUCGGGGGuCGCA-GaaCuuCag -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 46834 | 0.69 | 0.676764 |
Target: 5'- cUgCGGGCCCCCgAGCGUCUgccAGUa -3' miRNA: 3'- cGgGCUCGGGGG-UCGCAGAacuUCAg -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 13052 | 0.69 | 0.655647 |
Target: 5'- cCCCGGucGCCCCCAGCGaCagGAgcucgcgGGUCa -3' miRNA: 3'- cGGGCU--CGGGGGUCGCaGaaCU-------UCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 5753 | 0.69 | 0.646568 |
Target: 5'- cGCCCaGGCCCacagggaCAGCGUCagcagcgcGggGUCg -3' miRNA: 3'- -CGGGcUCGGGg------GUCGCAGaa------CuuCAG- -5' |
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21572 | 5' | -58 | NC_004812.1 | + | 49425 | 0.7 | 0.63647 |
Target: 5'- cCCCGGGCCgCC-GCGUCgUGGAcauGUCg -3' miRNA: 3'- cGGGCUCGGgGGuCGCAGaACUU---CAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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